G114687


Basic Information

Item Value
gene id G114687
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13330758 ~ 13332453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU131642
aacatttttatttaaaaaagagCCTCTCTTTTTCATATTTACAGAGCTTACCTTCATATCTGTGCTGAATGCACAACAACCAGAATGGTAGAATGAGAGGCAAATTAAAGAACACATGGCTGGAACAGGTCAGAAGAAGGATGTATATTAGAAGGTAGCGAAGCGAAATTTCAAAATCCTACTATATTTCAGACAGAAATAAATGAACTAATACCATAAcaaaaataaatcacaaacacTTGAGGAAGAAGAGGTTGCACTTTGATCCTCTTGGACAGTCACATAGTTGGCCGTACCGTGGTCCCTTTTTCACTGTGCAGTAGTCACCGACAATACAACTAGGAAGGTGGCTTTGTCTTCTTTCCCACACAGCCATTCTTCTGTTTTGGAGTTTCTCCAGGACGTTATGAAGGACACCCAgCAGTTCCCTAGAGTCCTCTATAACTTCAGCCTTTGGTAGCCTTTCGTCTGTCCATCCTGCAACCACATGGTCTGATTGAGATAGGATGTACAAAAAGGAAATGAACACCAGCAAGATAGCTGCTGATTTTGCCATGTCTGTTTCTAATTGTTGTGTTTTCCACCTAGGGCTAGGCGGAACGGATAATCTACTGTTCGGTCAAGAGAGAGGCAGATAACCTATGTAC
>TU131643
aacatttttatttaaaaaagagCCTCTCTTTTTCATATTTACAGAGCTTACCTTCATATCTGTGCTGAATGCACAACAACCAGAATGGTAGAATGAGAGGCAAATTAAAGAACACATGGCTGGAACAGGTCAGAAGAAGGATGTATATTAGAAGGTAGCGAAGCGAAATTTCAAAATCCTACTATATTTCAGACAGAAATAAATGAACTAATACCATAAcaaaaataaatcacaaacacTTGAGGAAGAAGAGGTTGCACTTTGATCCTCTTGGACAGTCACATAGTTGGCCGTACCGTGGTCCCTTTTTCACTGTGCAGTAGTCACCGACAATACAACTAGGAAGGTGGCTTTGTCTTCTTTCCCACACAGCCATTCTTCTGTTTTGGAGTTTCTCCAGGACGTTATGAAGGACACCCAgCAGTTCCCTAGAGTCCTCTATAACTTCAGCCTTTGGTAGCCTTTCGTCTGTCCATCCATGAGGAAGATGCGAGGACAACATGTTTGTTTTCATTCTGTG
>TU131644
GTATTCATTCAGTGGGAAAAACCATCTATTCGTGGGGTTAAATGTACCCATTAGTTACTCCAAAGGCTGTGTATAATCTACATCAGTTCTGAATAGAATCCGTTGAGACTTTGTTTCTTTAGTAGCTTTCAGTCGTCTTCAAAAAAAGGACACAGCATTAGCTTTTGGAGTGTTGATCTATTTTCCCCAGAACATGCTCTAGCAAGAATGTAGTCTTGACCCGCAATCCAAAAGGTGCCACCCACAACCCACCAGAGGGTCTGACCCACACATTTGGGAAATCGATCACCTAGTCAACTATTCACCTGTGGTGTCTGAAATAGCTTGCTTACACTAGGAAGGTGGCTTTGTCTTCTTTCCCACACAGCCATTCTTCTGTTTTGGAGTTTCTCCAGGACGTTATGAAGGACACCCAgCAGTTCCCTAGAGTCCTCTATAACTTCAGCCTTTGGTAGCCTTTCGTCTGTCCATCCATGAGGAAGATGCGAGGACAACATGTTTGTTTTCATTCTGTG

Function

NR:

description
PREDICTED: cocaine- and amphetamine-regulated transcript protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131642 False 647 lncRNA 0.41 3 13330758 13332229
TU131643 False 520 lncRNA 0.45 4 13330758 13332453
TU131644 True 515 lncRNA 0.41 3 13331379 13332453

Neighbor

gene id symbol gene type direction distance location
LOC110507612 NA coding upstream 82 13324937 ~ 13330676 (+)
LOC118936508 ano10 coding upstream 88903 13193145 ~ 13241855 (+)
LOC110507515 LOC106575761 coding upstream 269452 13046879 ~ 13061306 (+)
LOC118937726 NA coding upstream 403056 12926821 ~ 12927702 (+)
LOC110525149 LOC106589684 coding upstream 413960 12913631 ~ 12916798 (+)
LOC110507631 LOC106574283 coding downstream 50735 13383188 ~ 13387921 (+)
LOC110517609 sbp1 coding downstream 242044 13574497 ~ 13582605 (+)
LOC110507693 LOC106574548 coding downstream 251671 13584124 ~ 13604148 (+)
LOC110520769 LOC106593286 coding downstream 271851 13604304 ~ 13623972 (+)
LOC110513073 prune1 coding downstream 292180 13624633 ~ 13630579 (+)
G114656 NA non-coding upstream 26125 13303047 ~ 13304633 (+)
G114655 NA non-coding upstream 63196 13267344 ~ 13267562 (+)
G114653 NA non-coding upstream 64388 13266158 ~ 13266370 (+)
G114652 NA non-coding upstream 65151 13265328 ~ 13265607 (+)
G114689 LOC106606048 non-coding downstream 6511 13338964 ~ 13344183 (+)
G114712 NA non-coding downstream 97248 13429701 ~ 13431706 (+)
G114717 NA non-coding downstream 109401 13441854 ~ 13473747 (+)
G114897 NA non-coding downstream 351243 13683696 ~ 13684785 (+)
G114904 NA non-coding downstream 385779 13718232 ~ 13718727 (+)
G114323 NA other upstream 365828 12949360 ~ 12964930 (+)
G114263 NA other upstream 567931 12762232 ~ 12762827 (+)
G114244 NA other upstream 609443 12720730 ~ 12721315 (+)
G114243 NA other upstream 610065 12720408 ~ 12720693 (+)
G113396 NA other upstream 1620981 11708603 ~ 11709777 (+)
LOC110520780 LOC106574729 other downstream 369157 13663839 ~ 13756558 (+)
LOC110535330 LOC106574784 other downstream 628808 13961020 ~ 13976561 (+)
G115190 NA other downstream 809429 14141882 ~ 14144267 (+)
G115189 NA other downstream 902061 14234514 ~ 14236854 (+)

Expression


Co-expression Network