G115575


Basic Information

Item Value
gene id G115575
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14340647 ~ 14345292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU132776
CTTGGGCGATTTTCAGTAATCCTTGTACAGAGCGAGTATAGCCTAAATTCAAGAATCCTTCGCCCGAAGACGATCTcgtcgtggtggtggtagtaacaACAGTATGAGACATTTTGatatgtataaataaataaaatacagtgtaAATAGTCTAGACTACAGTGTATCGTGGCCCAAGAAACACAGTCAGCTGCTACTACTGTGCTTCGTCTACTTCATGGTCGTTACTAGTTACCAccgccacaaagtcataaaccccgcctgTTTCTACaaatcttcttaaaatgtgattttaaacctaatcctaaccttatgcctaaccgtaaccttaaaataagaccaaaaagcacaatTGCAGGTTATTTTACGATACATTTTTTTACGATAGCCAAGTTAGACTTTGCGGCTGTGGTAACTGGTGGAAACTCTACTTCATTGAGGGTGAGATTCAGTTGGGGTGGGGTTTCCAGGAAACAGTAGCATTTTTCAACTTCAACAGTTACAATGTTGCTTTTACTCAACGGGCCAGTTCGTTTTGCATGGCCCCAGGCGAGTGGTGAATTTATttaaggaccaatggaatggaCTAAAATGTGTAAGACACCGGGTAAAGAAAAACGAACTCGCCCATGGACATAAAATGACTGTCTGGAAGAGAAAGCGCCATCAAAACACGTATAGTCCGCAAATCACTCACGATTGAGTCTCATTTCTAGCCGCATGCTACTGGCAGCATTACCGCGTGTGTTATGGATGTAAATGATGAAGCATTTACAGTCTCCACCTAAATAGTGTTCACGTGATGGTTGAAGTTGATCTGTAGAAGATGATTAAGCATGTTATCAATCTGAATATGTTTGAAGTTCATCAAACGTATTCCTACTATTGTTAAAGACACTATATCAATGTAGCCGGCACCATAGACCCATACCTATTCGACCTCCGTACTATATCGACAGCTGAATTGTATTTGTCCCAGGTTAATTTAAGCATTTTTCCACCCACATTGCAAGCAAGCAAGAAGCTCACATTACTTTAAGGTCAGACCTAATGTAGGTTTTTGCATTGAATTGGTAACCATGTGGTGTCAACAGGTGTCAAACTATAGGCCCACCATCCTATCCCAATCGGACTGCACTAATGGGACTACCCCAGGCCATGCTAAAATAGTTTCAGTGTAGTGTATTATTTACATCTACATGCTTTAAACATCATCATTATgtcattctgccactgaacaaggcagttaacccactgttcctaggcaccCACAGACACTTACAAAAAATAACAAACTAAGCACAGATGTTAGGCCCATGTCAATCAAGCTACATAACAAAATGGATAGCGATGAAATAAGACTGAACCCCATCAGGAAGGAGTTTTTCATATTTTGATGCTTTGCAGCAGTAGGGTTTTGTTTCTGTCACCCCCATCCATAAACAGCTGTTACCATGGAGACGAGGGCAGGATGCTCTTCTCTGTCACCACTTCCCGGGACTGCTACAGAGCAGAATGGGAAAGAGTGCTTAGAAAACCTTACCACATAaaggcgcgcgcacacacacactctggctgTGCATACCAGTAGGCCTAGTCTCTATATAAGCAAGTGAAGCCAGATATGGGAACCAAACCACACCCTAAAAGGACATTACCATGGCGAGCCAAACAGTCTTATGCATCAGCTGTACAAACTTAAGAACTAGATCCCCCGTGACACTTTGAGAACACCAGAAACACTGCAGCCAAAGGAAACCAATACATTTACATATACAAATGCACCACACTCTTTCTGCTTCGTGGTTCTACAGGGACGTTTAGTTTCGTTTAGTGATGCACCACATGGTAAGAACATGGACATGGACCCAAGCGACTTTGCGTCCTTGAAAAATGCTATATAAATACTatgtattattatgattattatacaccaatattgtcacgacttccgctgaagttggtccctctccttgttcgggcggcgttctgcggtcgaagtcaccgaccttctagccatcgatgatcctcttttcattttcctttccatcacacctggttccaatcccatcaattacatgttgtgtatttaaccctctgttccccctcatgtccttgtcagattgtgtattgtaCTGTTTTCCGgtcgtttaatttttttttaactgcgCCGTTTGGAAACACAGTtcttgctctcctgcgtctgacttctctgccgctaGTACACACCCCTTACAAATATGAGAAAACCCTTCAGTAGTTCGCTGACAGAGTTCCTTGCAGAGCTGGTGGATGACCACACTCAACCAGAGATACACTGAAGTTTTGCCCAGATAGCATCAGCTGGTTCTGTGGTGGTTGAGGCGAATGACCGCGCTGGAATTCTTCTTTGGGTTCATGTGACGTGTGTTTAAAAGGAACGCTTCACTTCTTTGAAAGGAAACCCAGAAGTATAATGATGTAATGGCGCTCAGGAACAATAACAATAGTTATTGAGTAACATTTTTGACAATTACAATAACACTACAGTTACAATAACACTATAGTTACAATAACACTACAGTTACAATAACACTACAGTTACAATAACACTACAGTTACAATAACACTACAGTTACAATAAAACTACAGTTACAATAACACTACAGTTACAATAACACTACAGTTACAATAAAACTACAGTTACAATAACACTACAGTTACAATAACACTACAGTTACAATAACACTTGTAGGGCAATTATGTAATTGCACCTCCATAAGAATAACAATATAAAAACGGAATCTACCAAGTTGCCCCAATGTTGTGAACAATTTCAATAAGATTGACTGCTAAACTCTCGTTGATTACTTTTGAAAAATGTCTGTCAGAATGAGGGAGGTCAGTTTCATTATGACAGACCTCCAGAGTTACATTCTCTCTGCTGTGCCTCGGCAGTTCACCCTAGCTTCACAATAGCATAGTGGACACCTGAAATGACAATGGACAGCATAATCAGAATAATGGAATGACAATGAAAAGGGTTGGCGTTATGTCATGTTATGTCATGTTAAGGACAGTGCTGTCTCAGCTGTATTATACAATCTTAAGACTTTCTTGTGTCACTTCAAGAAAAACACTAAAAATAATTCACCTTCATCTGGTATGGGGATACGAGAGCTTCTTTGGGGTGCTTAAAAGAAAAGAGGGCAATTTCATAAGCTTATCTGAGCTGGTTCTGGTACTTGGTGGTATACCTATGTAATTCATGGCCCAAAATTGCAATAATTGAATACTTACATTGAGTGGTGGTGTTCAGTTGAACGTCTGAGTATACCAGATTTAGCTCCATGTCGCCATCTTCTGGTGAATTATGTTTATACAATGACTGTGGGCTTTCTGTTTGTGTAGAGAACAACAGTAAGAAACTGTGTGACACATTACAGATCTGAACCATCAGCAAATCCTTCACGGTCTTGTCCACTCACCCATTTCTGAGACATTGGCGTAGATAGAGGATTCACTGACCATAGCTTTAGAAACAGGGAAGTAAAATGTACAAATGTAAACTGCTGTGACGCACAAAGTTTATGACTGAATGAGAGGACATGAAGAGCTGTGCTCAGACTCTACACTGGAGCCGATCTTTTTGCCCACTTCTACAGAGGTGTAGTTGGGACACCAGGCAGGGATTGAAGGATACGGGAGAAGAGGGTGTAGAACACAGACAATGAGTGGGCCGTAGACAAGAGAAGGTGATGGACTGGTACATAGGGAAGCATATGTGTGGAGATAGTGAATAACAGGGCAGCAGGTAGTCCAGcgggttaagagtgttgggccagttcgaatccctgagcaaactaggtgaaacatctgccgatgtgcccttgagcgaggcacttaaccctaattgctcctgtaagtcgctctggatagagcgtctgctaaatgacaaaaatgtactgAATAGCCTACCACTTAAACTGGCTTTCAACTCACACTCTGCCCTTTCATCTGAGGAAAAATTATTACTGATCAGAAATACTATTCAAAGACTCAGATTGTCTAGAAAAGAGTAAGACCCCTTACCTATAGCAGGATCTGTGCACAACACAGATTGCTGCTTAATCTTTTCTGAATTGCAGAATCTCAGGTATCCTTTTGGAAAAGACCAGAGATAGTATATGAATCTGTAAATACGCCAAAAATATAATAACTTAActagtatttattttcttagaGATCACCTACCTCTTTTTCTCAGGTAAAATAAAGCCACGCCAAGGAGCAGCAGCAGAAGCAGGaccccacacacagagagggcTACGGTCAGCGCAGTGGGTCCAGGGGGGAACAGTCTCTCTGCCCTCCCCAGGCTGTTCTCTGCCCTGCAGGTGTACACTTCCTGGGTGAAGTAGGGGATTGAACTGATCCACTGAAATGGGTGGGTTCCTATGGTGCTGACACCTGGGTCTATGTTGCCCTTAGAGGAGGAGAACCAGGTGATGGTGGATGGGGGGTTCCCCTCAACTACACACCTGAGGCTCCCGTTGCCTGGTCCGAGGGACGCCTCTACCCAAGACAGGCTGAGAATCTGGGCCTTAG

Function

NR:

description
sialic acid-binding Ig-like lectin 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132776 True 4587 lncRNA 0.42 2 14340647 14345292

Neighbor

gene id symbol gene type direction distance location
LOC110533643 LOC106605966 coding downstream 5633 14332751 ~ 14335014 (-)
LOC110513641 NA coding downstream 49372 14290216 ~ 14291275 (-)
LOC110535417 LOC106585541 coding downstream 153386 14155666 ~ 14187261 (-)
LOC110535427 LOC106585544 coding downstream 259847 14046340 ~ 14080800 (-)
LOC110534084 LOC106574737 coding downstream 312769 13981286 ~ 14027878 (-)
LOC110490474 LOC106606103 coding upstream 20437 14365729 ~ 14374923 (-)
LOC110490494 LOC106586326 coding upstream 41441 14386733 ~ 14398249 (-)
LOC110490504 LOC106574261 coding upstream 53065 14398357 ~ 14405044 (-)
LOC110516895 LOC106574265 coding upstream 59103 14404395 ~ 14406810 (-)
LOC110535605 LOC106574865 coding upstream 63699 14408991 ~ 14418164 (-)
G115567 LOC106605965 non-coding downstream 105 14340148 ~ 14340542 (-)
G115564 NA non-coding downstream 3359 14336994 ~ 14337288 (-)
G115561 NA non-coding downstream 16312 14324080 ~ 14324335 (-)
G115557 LOC106585523 non-coding downstream 33505 14300171 ~ 14307142 (-)
G115492 NA non-coding downstream 213463 14126196 ~ 14224919 (-)
G115568 NA non-coding upstream 17885 14363177 ~ 14364307 (-)
G115586 NA non-coding upstream 29801 14375093 ~ 14375324 (-)
G115590 NA non-coding upstream 34997 14380289 ~ 14380500 (-)
G115431 LOC106574784 other downstream 364086 13962185 ~ 13976561 (-)
LOC118937748 LOC106574107 other downstream 679056 13650726 ~ 13661631 (-)
G114928 LOC106574568 other downstream 758041 13574535 ~ 13582606 (-)
tmem245 LOC106595499 other upstream 180776 14508116 ~ 14526558 (-)
alg2 alg2 other upstream 209967 14550685 ~ 14556207 (-)
G115601 sc61b other upstream 218511 14556423 ~ 14565399 (-)
G116014 NA other upstream 469987 14815279 ~ 14816661 (-)

Expression


Co-expression Network