G115330


Basic Information

Item Value
gene id G115330
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14504666 ~ 14505538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU132445
atttattacatccaatgtttaatagttaaagtggctagagatttgagtcagtatgttggcatcaaattaaagtttatttgtcacgtgcaccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggcgtagtagaccttacagtgaaatgctgaatacaacaggcgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcttacttacaggctcttaccaatagtgcaaaaaaggtattaggtgaacaataggtaggtaaagatataaaacaacagtaaaaagacaggctatatacagtagcgaggctataaaagtagcgaggctacatacagacactggttagtcaggctgatttgaGGTGGTATGTATATAtg
>TU132451
atttattacatccaatgtttaatagttaaagtggctagagatttgagtcagtatgttggcatcaaattaaagtttatttgtcacgtgcaccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggcgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggcgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcttacttacaggctcttaccaatagtgcaaaaaaggtattaggtgaacaataggtaggtaaagatataaaacaacagtaaaaagacaggctatatacagtagcgaggctataaaagtagcgaggctacatacagacactggttagtcaggctgatttgaGGTGGTATGTATATAtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132445 False 607 lncRNA 0.36 2 14504666 14505538
TU132451 True 797 lncRNA 0.39 3 14504666 14505538

Neighbor

gene id symbol gene type direction distance location
galnt1 galnt1 coding upstream 6885 14430901 ~ 14497781 (+)
trnat-ugu NA coding upstream 95928 14408666 ~ 14408738 (+)
LOC118936243 cklf7 coding upstream 147940 14344891 ~ 14356726 (+)
LOC110490457 LOC106605965 coding upstream 161449 14339490 ~ 14343217 (+)
LOC110535510 slc4a7 coding upstream 188447 14240232 ~ 14316219 (+)
sec61b sc61b coding downstream 50859 14556397 ~ 14565113 (+)
nr4a3 nr4a3 coding downstream 204384 14709922 ~ 14744937 (+)
stx17 stx17 coding downstream 247917 14753455 ~ 14775822 (+)
LOC110535632 invs coding downstream 288664 14794202 ~ 14837595 (+)
si:ch211-197h24.6 LOC106574428 coding downstream 355111 14860649 ~ 14867713 (+)
G115302 NA non-coding upstream 2096 14501822 ~ 14502570 (+)
G115327 NA non-coding upstream 12452 14490525 ~ 14492214 (+)
G115325 NA non-coding upstream 27637 14476540 ~ 14477029 (+)
G115322 NA non-coding upstream 32694 14471198 ~ 14471972 (+)
G115290 NA non-coding upstream 94965 14409047 ~ 14409701 (+)
G115331 LOC106573619 non-coding downstream 1123 14506661 ~ 14507500 (+)
G115342 LOC106595499 non-coding downstream 20499 14526037 ~ 14526515 (+)
G115343 NA non-coding downstream 21285 14526823 ~ 14527193 (+)
G115344 NA non-coding downstream 27819 14533357 ~ 14533634 (+)
G115346 NA non-coding downstream 30103 14535641 ~ 14558097 (+)
G115289 NA other upstream 96754 14406044 ~ 14407912 (+)
G115189 NA other upstream 267812 14234514 ~ 14236854 (+)
G115190 NA other upstream 360399 14141882 ~ 14144267 (+)
LOC110535330 LOC106574784 other upstream 541854 13961020 ~ 13976561 (+)
LOC110520780 LOC106574729 other upstream 795292 13663839 ~ 13756558 (+)
tmem67 LOC106606053 other downstream 371720 14870805 ~ 14882237 (+)
esrp1 LOC106605950 other downstream 500055 15005556 ~ 15026595 (+)

Expression


Co-expression Network