XLOC_020947 (use1)


Basic Information

Item Value
gene id XLOC_020947
gene name use1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11070842 ~ 11079068 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041207
TCTTCATTTGCCTGTTTGTTCCACCTTGTAATGTAAAAGTCGCGCTACTTCCGCTTTGAATGTCAAATATGGCCACGTCCAGACTGGAGATTAATTTCGTCAGATTATTGTCGCGCTGTGAATCGCTGGCTTCAGAGAAAAGAGCCGAGACAGAATGGAGACTAGAAAAGTATGTCGGTGCTCTCGAGGAGATGTTTGTCGCCCTCAAAAAAAGTCCCAGCAAACCCACACCGGAAACGCTGACAGACTACAACCGTAAAGTGGATTTCCTCAAGGGGCTTTTAGAGGCAGAGAAACTGCCGTCTCCAGCTGAGAAGTCTTTAGCCAATCAGTTTCTGGCTCCCGGACGAACGCCGACGATCTCCAGTGAGAGAACGCCAGCCAGCAAAACAGTCCACATTCAGAGCAAAGCCAGATGTGCTGGAGAGATGCGGAAAGAGTTGATGAGCAGCGGTGTGTCAAATTCCGCTTTACTAGAGAACGACCTCCGACACAGGAAAAGTCTTCCAGTAGACGAGCGTCAGTCGGCAGCAGAACTGGACCAAATCCTGCAGCATCATCACAACCTGCAGGAGAAACTGGCCGATGACATGCTGAATCTCGCGCGCAACCTCAAGAACAACACACTCGCCGCTCAGAACATCATCAAGCAGGACAACCAGACCCTCACACAGTCCATGCGTCAGGCGGACGTGAACTTCGAGAAGCTGAAAACCGAGTCCGAGCGACTGGAGCAACACGCCAAAAAATCCGTCAACTGGTTCCTGTGGCTGATGCTAATAGTTGTTTCTTTCACCTTCATCAGCATGATCCTGTTTATAAGACTGTTCCCGCGGCTCAGATGATGCTAATCCAGTTTAGCAAAACAGCTAGGTTTTATTTATCTATAACAAAAGGTTTACATATATAGACTCCAGCCAAAAGTTATAGAAATGTATGATTGACGGCCTCAGTCATTCCCGCGGAAAATCTACATTACCTGCATGCCATTGTGATGTCATAACGAATTCGCGCCGAATCCCTACTGTCAATAAAGTGATGAGGGAATCCCTTCTTTTGTTCGACCATGTTGATGATGCTCGTTAATAACGGTAAGTTATTGTTATTCCATAACCGCAAACTATTCGTCAACCATTTAATAAACGACTTATCTAACAATAAACGCTGTTAAAATTAAGTTTCAAGTAAACCATGTCTTTTTAAAGACGAGCTTAAATTAAATTACCTCATGAAAATTCTGTTTAATGTAGCCAAATAAAACACTACATATGAGATGCTTAACATGACTTAACGTTTAATTCCGCTTTTTTATGACCTCAGTCAATTGATCCACGTACTGTACTGTACGATGGCTATAAAAATGCACCGAGCTGATTTAAAGTCCGGTCGGCTTGTATCGGTTCAGTGAGGAAATGTTCTGGCAAACAGCAGGAAGTTATTTTGCTTGTCGGACGCACACATGGAGACTGTCTTCTCCACCCAGAGAGTAAATGGCCCGTATTTAGCTGAAGGTTTATTTCTGCGTGTTCTCTTATGGTGGATGAAGTGTTAAGTATTGCTCAGATATGGTGTTTGTGCTACTATTGATGGATGTTAATGTTTGTCTCAAGCGTCCCGTCATTGATTGTTCGTCATGTACTGTTTGCTTTAATTGATTCACATGAGAACAGGcgacacattgttttttttttttttgtttggttttttttgtcTTCAATGTGTTCAAATGTAGTGAGACTGAAAAATAGAGACGTgtgtattgttttaataaaattatttgcagTC
>TCONS_00041208
AGACTGGAGATTAATTTCGTCAGATTATTGTCGCGCTGTGAATCGCTGGCTTCAGAGAAAAGAGCCGAGACAGAATGGAGACTAGAAAAGGACGgtatttaaaaatgtctatagaaggcaagacactgcaggtggaTAGGgTATGTCGGTGCTCTCGAGGAGATGTTTGTCGCCCTCAAAAAAAGTCCCAGCAAACCCACACCGGAAACGCTGACAGACTACAACCGTAAAGTGGATTTCCTCAAGGGGCTTTTAGAGGCAGAGAAACTGCCGTCTCCAGCTGAGAAGTCTTTAGCCAATCAGTTTCTGGCTCCCGGACGAACGCCGACGATCTCCAGTGAGAGAACGCCAGCCAGCAAAACAGTCCACATTCAGAGCAAAGCCAGATGTGCTGGAGAGATGCGGAAAGAGTTGATGAGCAGCGGTGTGTCAAATTCCGCTTTACTAGAGAACGACCTCCGACACAGGAA

Function

symbol description
use1 Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in endoplasmic reticulum. Orthologous to human USE1 (unconventional SNARE in the ER 1).

GO:

id name namespace
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1015 Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in endoplasmic reticulum. Orthologous to human USE1 (unconventional SNARE in the ER 1).

Ensembl:

ensembl_id ENSDARG00000007250

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041207 False 1785 mRNA 0.43 8 11070842 11079068
TCONS_00041208 True 470 mRNA 0.49 7 11073765 11078988

Neighbor

gene id symbol gene type direction distance location
XLOC_020946 insrb coding downstream 16598 10927370 ~ 11054244 (-)
XLOC_020945 NA coding downstream 143884 10922765 ~ 10926958 (-)
XLOC_020944 BX908744.2 coding downstream 153049 10903510 ~ 10917793 (-)
XLOC_020943 BX908744.1 coding downstream 169866 10895963 ~ 10900976 (-)
XLOC_020942 arhgef18b coding downstream 179629 10814204 ~ 10891213 (-)
XLOC_020948 NA coding upstream 3874 11082942 ~ 11097837 (-)
XLOC_020949 NA coding upstream 8336 11087404 ~ 11089700 (-)
XLOC_020950 BX649485.2 coding upstream 11270 11090338 ~ 11091099 (-)
XLOC_020951 NA coding upstream 23837 11102905 ~ 11104271 (-)
XLOC_020952 atp6ap2 coding upstream 44419 11123487 ~ 11137268 (-)
XLOC_020940 BX908398.1 non-coding downstream 306795 10763933 ~ 10764047 (-)
XLOC_020938 NA non-coding downstream 359311 10706775 ~ 10711531 (-)
XLOC_020961 NA non-coding upstream 593121 11672189 ~ 11674421 (-)

Expression


Co-expression Network