G115857


Basic Information

Item Value
gene id G115857
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15092002 ~ 15093549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU133140
gagaggatgtacctggtgtcagtgtagaggagtagagaggatgtACTTGGTGTCAGTGTAAAGGAGTAGAGAGGATTCAGAGAGGATGTACATGTGGTATCTGTTGGAAGATGTtaattgcatactcctcgcgtcctctcctcgtctccttcttaaaacccattggatgagagagccagaggagagaggacgcgaggATTATGCAATTGAGATCTTACCTGTCAGACAGACATCACAGTCAACCCAAGAAAGTGTTTTATACTATAACATAGCAACAATTAtaatttaaaggggcaatctggagttgaaacaataacaaagcagtaACCCCATCACTGTTTTGGccaaaagctgagggatggatggggctggagaaatgttacCGCTCTCAAATTACTAGGCAGAACTATGtatacaaggactgaccatcatcaaaattatagtttgaaccatgttttgaggctatagagtgtttgtttacatttactttgtttaccaACATTGAAGATGAACAAGCTTATGTTTGGtgttttggggttctgatggggtacgacagttgaactaagctcatgaggcatTTATAAGATATTCTTCCAGAatcaaaaatgtatgtagcaactgcagattgccccatGAACCTAAATGTTTTTCTGAGTGAGTAAGAAATGAGCAGTGGGCACCTTTAAAGTTCATTCATCTTTAAAGTATTGATATTGAATTCAATGTTAAGGTAGACTCAGTGAAATGGcgttgccacgagcagcaccacagatattgagatgagtgaGATGCAGGACCTCACACACAGTGTCTGCGGAGCAGGAGGCTGGTGGCTTTTTAATTGGGGAAAACGGGCTCATAGTAACGGCTGGaacggaatcaatggaatggtattggtttccatgtgtttgatagcattgcattcactccattccagacattactatgagccgtcctcccctcagttgCGGATGGGTTCGCTTCACACTGTTCCCTGGCCTGGCTACCGGGAATCAAACGCTCGTAGTTGTTGTGGGAATTGATCCACAATGCTGTTTACTTTCAGCATCTACGTCATATCGCTGCGTCCACC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU133140 True 1093 lncRNA 0.43 2 15092002 15093549

Neighbor

gene id symbol gene type direction distance location
LOC110520775 LOC106605953 coding upstream 649 15079627 ~ 15091353 (+)
LOC110533650 LOC106592818 coding upstream 15383 15068668 ~ 15076619 (+)
esrp1 LOC106605950 coding upstream 65407 15005556 ~ 15026595 (+)
rnf41l LOC106570746 coding upstream 111079 14974341 ~ 14981270 (+)
LOC110535729 LOC106606054 coding upstream 199150 14882494 ~ 14892852 (+)
LOC110508003 LOC106605954 coding downstream 1347 15094896 ~ 15108480 (+)
LOC110507970 LOC106606114 coding downstream 66623 15160172 ~ 15170433 (+)
LOC110535768 fam171a1 coding downstream 163720 15257269 ~ 15311917 (+)
LOC110535774 LOC106576081 coding downstream 222051 15315600 ~ 15326000 (+)
LOC110535811 acbd7 coding downstream 236023 15329572 ~ 15336358 (+)
G115880 NA non-coding upstream 9721 15081997 ~ 15082281 (+)
G115858 NA non-coding upstream 14658 15076723 ~ 15077344 (+)
G115853 NA non-coding upstream 75220 15016402 ~ 15016782 (+)
G115883 NA non-coding downstream 16922 15110471 ~ 15110691 (+)
G115884 NA non-coding downstream 19250 15112799 ~ 15113008 (+)
G115886 NA non-coding downstream 21955 15115504 ~ 15115736 (+)
G115887 NA non-coding downstream 23352 15116901 ~ 15117103 (+)
G115854 NA other upstream 60557 15030439 ~ 15031445 (+)
tmem67 LOC106606053 other upstream 213327 14870805 ~ 14882237 (+)
si:ch211-197h24.6 LOC106574428 other upstream 226719 14860649 ~ 14867713 (+)
stx17 stx17 other upstream 321099 14753455 ~ 14775822 (+)
G116207 NA other downstream 177653 15271202 ~ 15271609 (+)
G116224 NA other downstream 243881 15337430 ~ 15337702 (+)
LOC110535783 LOC106606004 other downstream 262309 15355848 ~ 15368210 (+)

Expression


Co-expression Network