G115888


Basic Information

Item Value
gene id G115888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15118537 ~ 15118754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU133179
ATGTAAGTGTATGTGTTTAACTTTAGTATATACCTCTGGCCAAAAGTTGGAGCTCGTGGTTGTCTGAGGTGTCAGGCATGTAGTGCAGAGTGAAGTCTCTGCTGTCATAGAAACACAACCCCAACTGCCCATGCTGGGCAAACACACTCAGcaacacctggacacacacacacacattatcttaATCTGCCTTGGCCCATTGTTTGTAGTTTGTATAG

Function

NR:

description
PREDICTED: mutS protein homolog 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133179 True 218 lncRNA 0.45 1 15118537 15118754

Neighbor

gene id symbol gene type direction distance location
LOC110508003 LOC106605954 coding upstream 10057 15094896 ~ 15108480 (+)
LOC110520775 LOC106605953 coding upstream 27184 15079627 ~ 15091353 (+)
LOC110533650 LOC106592818 coding upstream 41918 15068668 ~ 15076619 (+)
esrp1 LOC106605950 coding upstream 91942 15005556 ~ 15026595 (+)
rnf41l LOC106570746 coding upstream 137614 14974341 ~ 14981270 (+)
LOC110507970 LOC106606114 coding downstream 41418 15160172 ~ 15170433 (+)
LOC110535768 fam171a1 coding downstream 138515 15257269 ~ 15311917 (+)
LOC110535774 LOC106576081 coding downstream 196846 15315600 ~ 15326000 (+)
LOC110535811 acbd7 coding downstream 210818 15329572 ~ 15336358 (+)
LOC110535783 LOC106606004 coding downstream 237094 15355848 ~ 15368210 (+)
G115887 NA non-coding upstream 1434 15116901 ~ 15117103 (+)
G115886 NA non-coding upstream 2801 15115504 ~ 15115736 (+)
G115884 NA non-coding upstream 5529 15112799 ~ 15113008 (+)
G115883 NA non-coding upstream 7846 15110471 ~ 15110691 (+)
G115890 NA non-coding downstream 2174 15120928 ~ 15121154 (+)
G115891 NA non-coding downstream 2465 15121219 ~ 15197958 (+)
G115928 NA non-coding downstream 81601 15200355 ~ 15202866 (+)
G115924 NA non-coding downstream 86669 15205423 ~ 15253684 (+)
G115934 NA non-coding downstream 106313 15225067 ~ 15227567 (+)
G115854 NA other upstream 87092 15030439 ~ 15031445 (+)
tmem67 LOC106606053 other upstream 239862 14870805 ~ 14882237 (+)
si:ch211-197h24.6 LOC106574428 other upstream 253254 14860649 ~ 14867713 (+)
G116207 NA other downstream 152448 15271202 ~ 15271609 (+)
G116224 NA other downstream 218676 15337430 ~ 15337702 (+)
LOC110535842 LOC106605985 other downstream 331714 15448845 ~ 15451856 (+)

Expression


Co-expression Network