G115928


Basic Information

Item Value
gene id G115928
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15200355 ~ 15202866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU133224
cccttcagctaccctcaacccctctcaccaatctctgaaaaccatccaacTTTATAAGGGTACACTTATCATAGTTCAGTTGTATtccagagaggttagagaaaTGATCTAGATTGTCTATGAGTCTCTGCAGCGATCCAAatggtggttttaaaagaaagcaTAAGtcctcagcgtacaatgacacctttgtttttaagccccgGATTTCTATCCCCTTGATTTTATTGTTggttctgattttaatagctaacattttgatGGCCATGATGAATAGATATGTCgacagtggacaaccttgtttcacTCCTCTTGACAG

Function

NR:

description
Retrovirus-related Pol polyprotein LINE-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133224 True 319 lncRNA 0.46 2 15200355 15202866

Neighbor

gene id symbol gene type direction distance location
LOC110507970 LOC106606114 coding upstream 29922 15160172 ~ 15170433 (+)
LOC110508003 LOC106605954 coding upstream 91875 15094896 ~ 15108480 (+)
LOC110520775 LOC106605953 coding upstream 109002 15079627 ~ 15091353 (+)
LOC110533650 LOC106592818 coding upstream 123736 15068668 ~ 15076619 (+)
esrp1 LOC106605950 coding upstream 173760 15005556 ~ 15026595 (+)
LOC110535768 fam171a1 coding downstream 54403 15257269 ~ 15311917 (+)
LOC110535774 LOC106576081 coding downstream 112734 15315600 ~ 15326000 (+)
LOC110535811 acbd7 coding downstream 126706 15329572 ~ 15336358 (+)
LOC110535783 LOC106606004 coding downstream 152982 15355848 ~ 15368210 (+)
LOC110534183 LOC106576069 coding downstream 171771 15374637 ~ 15400616 (+)
G115891 NA non-coding upstream 2397 15121219 ~ 15197958 (+)
G115890 NA non-coding upstream 79201 15120928 ~ 15121154 (+)
G115888 NA non-coding upstream 81601 15118537 ~ 15118754 (+)
G115887 NA non-coding upstream 83252 15116901 ~ 15117103 (+)
G115886 NA non-coding upstream 84619 15115504 ~ 15115736 (+)
G115924 NA non-coding downstream 2557 15205423 ~ 15253684 (+)
G115934 NA non-coding downstream 22201 15225067 ~ 15227567 (+)
G115936 NA non-coding downstream 43772 15246638 ~ 15249138 (+)
G115937 NA non-coding downstream 46951 15249817 ~ 15254203 (+)
G116197 NA non-coding downstream 59814 15262680 ~ 15263270 (+)
G115854 NA other upstream 168910 15030439 ~ 15031445 (+)
tmem67 LOC106606053 other upstream 321680 14870805 ~ 14882237 (+)
si:ch211-197h24.6 LOC106574428 other upstream 335072 14860649 ~ 14867713 (+)
G116207 NA other downstream 68336 15271202 ~ 15271609 (+)
G116224 NA other downstream 134564 15337430 ~ 15337702 (+)
LOC110535842 LOC106605985 other downstream 247602 15448845 ~ 15451856 (+)

Expression


Co-expression Network