G115936


Basic Information

Item Value
gene id G115936
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15246638 ~ 15249138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU133234
cagctaccctcaacccctcccaccaatctctgaaaaccatccaacTTTATAAGGGTACACTTATCATAGTTCAGTTGTATTCTAGAGAGGTTAGAGAAATGATCTAGATTGTCTATGAGCCTCTGCAGCGATCCAAatggtggttttaaaagaaagcaTAAGtcctcagcgtacaatgacacctttgtttttaagccccaGATTTCTATCCCCTTGATTTTATTGTTggttctgattttaatagctaacatttggATGGCCATGATGAATAGATA

Function

NR:

description
LINE-1 reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133234 True 275 lncRNA 0.39 2 15246638 15249138

Neighbor

gene id symbol gene type direction distance location
LOC110507970 LOC106606114 coding upstream 76205 15160172 ~ 15170433 (+)
LOC110508003 LOC106605954 coding upstream 138158 15094896 ~ 15108480 (+)
LOC110520775 LOC106605953 coding upstream 155285 15079627 ~ 15091353 (+)
LOC110533650 LOC106592818 coding upstream 170019 15068668 ~ 15076619 (+)
esrp1 LOC106605950 coding upstream 220043 15005556 ~ 15026595 (+)
LOC110535768 fam171a1 coding downstream 8131 15257269 ~ 15311917 (+)
LOC110535774 LOC106576081 coding downstream 66462 15315600 ~ 15326000 (+)
LOC110535811 acbd7 coding downstream 80434 15329572 ~ 15336358 (+)
LOC110535783 LOC106606004 coding downstream 106710 15355848 ~ 15368210 (+)
LOC110534183 LOC106576069 coding downstream 125499 15374637 ~ 15400616 (+)
G115934 NA non-coding upstream 19071 15225067 ~ 15227567 (+)
G115928 NA non-coding upstream 43772 15200355 ~ 15202866 (+)
G115891 NA non-coding upstream 48680 15121219 ~ 15197958 (+)
G115890 NA non-coding upstream 125484 15120928 ~ 15121154 (+)
G115888 NA non-coding upstream 127884 15118537 ~ 15118754 (+)
G115937 NA non-coding downstream 679 15249817 ~ 15254203 (+)
G116197 NA non-coding downstream 13542 15262680 ~ 15263270 (+)
G116205 NA non-coding downstream 17979 15267117 ~ 15267318 (+)
G116208 NA non-coding downstream 22798 15271936 ~ 15272210 (+)
G116209 NA non-coding downstream 27035 15276173 ~ 15276467 (+)
G115854 NA other upstream 215193 15030439 ~ 15031445 (+)
tmem67 LOC106606053 other upstream 367963 14870805 ~ 14882237 (+)
si:ch211-197h24.6 LOC106574428 other upstream 381355 14860649 ~ 14867713 (+)
G116207 NA other downstream 22064 15271202 ~ 15271609 (+)
G116224 NA other downstream 88292 15337430 ~ 15337702 (+)
LOC110535842 LOC106605985 other downstream 201330 15448845 ~ 15451856 (+)

Expression


Co-expression Network