XLOC_020956 (gnav1)


Basic Information

Item Value
gene id XLOC_020956
gene name gnav1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11538392 ~ 11594414 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041218
AATGGGTCTGTGTTTGGGCTCAGAGGTGACAACAGAGGAGGACAAGAAGGCGAAGATCCACAGCTCGCAGATAGACAGAGACCTGTACGAGTACGCCAAGAGAGAGTTGAACGTGGTGAAGATCCTCTTGCTGGGTGCTGCAGAAAGTGGAAAAAGTACGCTggtcaaacagatgaagattATCCACAGTCATGGATTCACCAAACAAGAGCTTACTAGCTTTAAGCCGGCGGTGCTTGATAATCTGCTGACCTCCATGAAGTTTGTCCTGCATGGGATGGGTGTCCTTCGCATCAACCTCGCCAACCCAAAAAACAAGGTTCACGCTCACTCGGTTCTCTCGTGTGGCCGTTGTTTTGATGAAGACCAGATGCTGTTCCCCTTCATAGCCCACGCCCTCTGCTGTTTGTGGGCGGATCCGGGTGTGCGTTCGTCTGCGGCACGCGGATACGAGTACGAACTCAATGACTCGGCACTATATTTTTTCGAGAACATGGGCAGGATCATCGCTGACGATTACATGCCGACAGAGACGGATGTTTTGAGAGTGCGACTGAGAACCACAGGAGTGATTGAGACTCAGTTCAAAGTCAAACACCTGGTCTTCAGGATGTATGACGTTGGCGGTCAGCGGACGGAGAGGAGGAAGTGGATCAGCTGTTTCGAGTATGTGAGGTCTGTGCTGTTCGTTGTCTCTCTGAGTGGATACGACATGACGCTGGTAGAGGATCCATCTATGAATCGCCTGCAGGAGAGTCTCAAGCTCTTCTCTTCAATCTGCAACAACATCTTCTTCAGGGGCACCTCCATGattttattcATGAATAAGATTGATCTTTTCCAAGAGAAGATCCTCCACTCGGGGCGTCATCTGCGCCATTACCTTCCCCAGTTCAGAGGAGCTGACTGTGATGTTGATGCTGCCGCTCGCTTCATCGCCGACATGTTCGTGTCATTAAACGCGTCTCCCAGTAAACTCATCTACCATCACTTCACCACAGCCACCGACACATCCAACGTCCAGGTGGTTTTCCAGGTGGTGATGGACACCATTATCAAGGAGAACCTGGAGGCTGTTTCTCTGCTCTGAGGAAAACCTGTAAAAGACTCATAGATGAGCCAAGCATATGCTGGTATTTATTACATATGATGCTCTCATATTAATCCAAACAGAGCGACCGCACACCTTTCCTTAAGTTTATACGTTTTTcttacttaaaaaattaaatattatgctCAAAATGCAATAATCAGGCCATATGAATCATATATTACGCTTTTGGAAGTGTAAATCACACTAAATCAACATCTCATTATTCTCCTGATGTTCCTCACATGCTGGTTAATCATCacttaaaaatcacattttcccctggtgtaatgtttttatttagtgtGATGCATTTTAGAGTTAATATTTTAcgttatgaatcatgttttgctTTTGACTCAGTTGGGATCCAATGCATTGCAGCACTTTGATGGTGAGTTGGTGATTCAGTCTGAAATGGTTTTGTTATACCAAAATTGAGCGAGCGTTCTGTATGAAGCACAatgcatattgttttgtttaccatTTATATTCCA

Function

symbol description
gnav1 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and Rho protein signal transduction. Predicted to be part of heterotrimeric G-protein complex. Is expressed in several structures, including digestive system; integument; nervous system; otic vesicle; and pleuroperitoneal region.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-92 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and Rho protein signal transduction. Predicted to be part of heterotrimeric G-protein complex. Is expressed in several structures, including digestive system; integument; nervous system; otic vesicle; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000043006

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041218 True 1587 mRNA 0.45 9 11538392 11594414

Neighbor

gene id symbol gene type direction distance location
XLOC_020955 slc26a11 coding downstream 17987 11497366 ~ 11520405 (-)
XLOC_020954 tspan7b coding downstream 45156 11440705 ~ 11493236 (-)
XLOC_020953 mid1ip1b coding downstream 99765 11436447 ~ 11438627 (-)
XLOC_020952 atp6ap2 coding downstream 401124 11123487 ~ 11137268 (-)
XLOC_020951 NA coding downstream 434121 11102905 ~ 11104271 (-)
XLOC_020957 pcyt2 coding upstream 2018 11596432 ~ 11614973 (-)
XLOC_020958 gcga coding upstream 23106 11617520 ~ 11626018 (-)
XLOC_020959 dpp4 coding upstream 34024 11628438 ~ 11648322 (-)
XLOC_020960 mettl21a coding upstream 62725 11657139 ~ 11661724 (-)
XLOC_020961 NA coding upstream 77775 11672189 ~ 11674421 (-)
XLOC_020948 NA non-coding downstream 440555 11082942 ~ 11097837 (-)
XLOC_020950 BX649485.2 non-coding downstream 447293 11090338 ~ 11091099 (-)
XLOC_020949 NA non-coding downstream 448692 11087404 ~ 11089700 (-)
XLOC_020945 NA non-coding downstream 611434 10922765 ~ 10926958 (-)
XLOC_020962 NA non-coding upstream 102858 11697272 ~ 11698675 (-)
XLOC_020969 CR847870.5 non-coding upstream 990425 12584839 ~ 12584954 (-)
XLOC_020972 CR847870.3 non-coding upstream 1104707 12699121 ~ 12726556 (-)
XLOC_020975 NA non-coding upstream 1183475 12777889 ~ 12786441 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_07216807_07247307 GNAV1 coding CI01000030 null 7216807 ~ 7247336 (+)