G116289



Basic Information


Item Value
gene id G116289
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15503282 ~ 15503845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU133685
GAACAGGGACAGTAGATAGACTATTGAACAGGGACAGTAGATAGACTAttgaacagagacagtagataggCTATTGAACAGAGAAcagggacagtagatatactaTTGAACAGGGACAGTAGATACACTAttgaacagagacagtagatagactattgaacagagacagtagatagaCTAttgaacagagacagtagatagacTATTGAACAGAGAACAGGGACAATAGACATACTATTGTACAGGGACAGTAGATAGACTATTGAACAGGGACAGTAGATAGACTATTGAACAGAGACAGTATAAATACTATTGAACAGAGAACAGGGACAGTAGATAGACTAttgaacagaGACAGTAGATAGACTAttgaacagagacagtagatcgactattgaacagagacagtagatagactattgaacagagaca

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU133685 True 432 lncRNA 0.47 3 15503282 15503845

Neighbor


gene id symbol gene type direction distance location
LOC110535823 LOC106576036 coding upstream 25327 15467158 ~ 15477955 (+)
LOC110535842 LOC106605985 coding upstream 51426 15448845 ~ 15451856 (+)
rundc3b LOC106576055 coding upstream 54748 15437892 ~ 15448698 (+)
LOC110534183 LOC106576069 coding upstream 102666 15374637 ~ 15400616 (+)
LOC110535783 LOC106606004 coding upstream 135072 15355848 ~ 15368210 (+)
osgin2 osgin2 coding downstream 120132 15623977 ~ 15633803 (+)
LOC110535935 LOC106575347 coding downstream 168141 15671986 ~ 15681594 (+)
LOC110534191 LOC105029233 coding downstream 187287 15691132 ~ 15694443 (+)
LOC110535950 LOC106575322 coding downstream 197341 15701186 ~ 15734894 (+)
ecm1b ecm1 coding downstream 238485 15742330 ~ 15755295 (+)
G116269 NA non-coding upstream 24105 15478624 ~ 15479177 (+)
G116252 NA non-coding upstream 89609 15410895 ~ 15413673 (+)
G116239 NA non-coding upstream 104366 15397846 ~ 15398916 (+)
G116323 NA non-coding downstream 63381 15567226 ~ 15575737 (+)
G116325 NA non-coding downstream 89350 15593195 ~ 15603938 (+)
LOC110535866 gtpbp10 non-coding downstream 106857 15482391 ~ 15614954 (+)
G116340 LOC106575260 non-coding downstream 141052 15644897 ~ 15649115 (+)
G116368 NA non-coding downstream 195568 15699413 ~ 15699661 (+)
G116224 NA other upstream 165580 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 166924 15329572 ~ 15336358 (+)
G116207 NA other upstream 231673 15271202 ~ 15271609 (+)
G117048 NA other downstream 679841 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 1491865 16995630 ~ 16998361 (+)
G117704 NA other downstream 1546287 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1569356 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1896168 17395343 ~ 17421816 (+)

Expression



Co-expression Network