XLOC_020957 (pcyt2)


Basic Information

Item Value
gene id XLOC_020957
gene name pcyt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11596432 ~ 11614973 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041219
GTCGTTTGCGCGTCGCATCATCTACGCTGCGCACACTCTCGGGGCGTCTGGAAGGGCGTAGAGATTTCGCCGGTCATTCATATCCGCACGGACCATTACTACCGCTTTTAACGCCAGTCAGGGAACTTCATAGGCTTCAAGAAGATGATCAGGAACGGAAGCCATGCGGTGGAGCAGGAGGACCGCGCACAGCCGAGCTCCTCGACCCACAGCCCCGAGAAGAGGAAGCGGGTGATCCGGGTGTGGTGTGACGGCTGctatgacatggtgcattacgGCCACTCAAACCAGTTACGCCAGGCCAAGGCGATGGGAGATTATCTGGTCGTAGGAGTTCACACAGACGAGGAAATAGCCAAGCACAAGGGTCCTCCAGTCTTCACACAGGCAGAGCGTTATAAAATGATACGGGCCATCAAGTGGGTGGATGAGATCGTGGAAGGGGCTCCGTATGTTACTACGCTGGAGACGCTGGACAAGTACAACTGCGATTTCTGCGTGCACGGAGATGACATCACATTGACTGTGGATGGTAAGGATACATACGATGAGGTGAAGAGAACAGGGAGATACCGGGAGTGCAAACGCACACAAGGAGTGTCTACGACAGACCTAGTGGGTCGAATGCTCCTGTTAACAAAAGCGCACCACAGTAACATTGACAATGCAGCTTATCAAGTGCACACGGATAATTTTGGGAAGGGTCCTAAAGGACACAGCCCATGGACCGGCGTCTCTCAGTTCCTGCAGACGTCTCAAAAGATCATCCAGTTCGCCTCTGGAAAAGAGCCGCAGCCAGGAGACACCATCATATATGTGGCGGGAGCGTTCGACCTCTTCCACATCGGTCATGTGGATTTCCTTGAGACGGTTCACAGACAAGCAGAGAAACCTTACGTCATCGTCGGACTGCACTTTGACCAGGAAGTGAACCGCTACAAAGGGAAAAACTACCCCATCATGAATATTCACGAGCGAACCTTGAGTGTGCTCGCTTGCAGATACGTGTCTGAGGTTGTCATCGGGGCTCCGTACGCTGTCGAAAAAGATCTTCTGGATCACTTTAAGGTGGATCTGGTGTGTCATGGGAAAACCAATGTATTTCCTGACGCAGATGGAACCGACCCTTATGCTGAGCCAAAGAAAAGAGGTATTTTCCGCATCCTGGACAGCAGCAACAATCTGACCACTGACGACATTGTTCAGAGAATCATTGAGAACAGGCTGCAGTTTGAAGCCAGGAATCAGAAGAAGGAAGCGAAAGAAATGGCTGTTCTCCAGGCTTTGAAGCGTAAAGATGAATCTGTGAAAAGTGAAGCAGCTCTTGCGAAGAATTAACCAAACCAAGCTAATCGGTATTGTCGTAGAACAGAATCACCCCTGGACTCATTCAATTACATTCAGTAATGAACAGTaaggtattttaaaaaaagaaagaggagGACAAGGACTTGTTTTAAATCATACGACTCTTGTTTGAAGAAAATGCACTTTGTTGTGTGCAGAGAGTGTTTATGGCACCTATTTAATGGGTTGAAAACTTTCTCTCTGAGTGGGAGAAACATTCGGCAAATGCTTTTACATAATTTATGAAGTTGATGGAAAGATTGTGtcatttttaaccattttttgaaaaaagaaatgttCCAGCTGCGCATATGCTTACTGAAGGAAACATTCACGTCGACTCAAATCGTATCTGATCATACTAGTGAGGTTAATCTTACTAGCGTGGGTGAGTCTTGTGGTGTCATATTCAGGTCATATTTTACTCCAAAATCAAAAGGGTAGTGCTTAAATACATTTGCccctattaaaactattaactttttttgcattttgataaaatttaatttaatactctCATTACTTTAAAGTATAATGAAtatgtttaacttttattttattgtgatgtttacttttttatgtaaattagCAATCTAGAACCTTTAGAAGTTATGAAACATAAAAACCTAAAGAGTTTTCAAAATTGCAGACTAAAAACTGAGATCTCTGAGAATTTGGAACTTAGGGAATTTTCAGAATTTACAATTTAGAATTGCTTACTCTGAGAATTTAGAACTTTGAGAACATAAACACAGAACCCAAAGAACCTACAAACTAGAACTGGAGAACTCTGAAAATGTAGAACTTCAGAGTATGAAGGACTTGTGATCTAGAACCTGGAAACATAGAACCCAATGAACTTGCAGAACTTATAATCTAGAACTGGAGAACTCTGAGGATTTAGAACTTGGAAAACATGAACATAGTACAAGGAGAACTTACGATCTAGAACTAGAGGATTCTGAGGATTTAGAACTTAGACAAAATGTACATAGAACTAAATGAACTTGCAGAATTTATCATCTAGAACCAGAGAATTTTGAGGATTTGTAACTTGGAGAACATGAACACTGTACCTTCAAACTAGAGATCTCTGAAAATTTAGAACTGAATATAGAACCTGAAATACTTGGAGAACTTACTAAATATACTGTCTAGAACGTGAAAACTCTTGAGAATCTAGAACTTGGAGAACATAAACAGATAATCTGAAGTACCTTGAGAACTGTTGAGAATCTACAACTTGAAGAACATGAACAGAGAATCTGAAGTACTTGGATAACTTGCAAAATGTACTGTTTAAAACAGGAGTACTCTTGAGAATCTAGAACTTGAAGAACTTACAAAATGTACTCTCTAGAACCGGTGACCTATTGAGAATGTAGACCTCATAGAACATGAACAGAGACTCTGAGTTACTTGCAGAACTATTGAGAATCTAGAACTTGGAGAACAGGAAAAATGAACCTGAAGTTCTTGGAGAACTTAAATGTACTATCTAGAACCGGTGAGCGATTGAGAATCTAGAACCTGGAGAACATGAACATAGAACCTGACATACATGGAGAACTTACAAAATATACTATCTAGAAGTGGAAAACTGTTGAGAATCTAGAACTTGGAGAACATGAACAGAGAATCTAAAGTACTTGGATAACTTACAAAATGTACTGTCTAAAACAGGAATACTCTTGAGAGTCTAGAACTTGGAGAACTTAAAAAATGTACTGTTAAGAACTGGTGACCTATTGAGAATCTAGAACTTGGAGAACATGAACATAACCTGAAGTACTTGGAGAACTTACAAAATGTAATGTCTAGAAGTGGAGTACTCTTGAGAATCTAGACCTTAGAGAAGATGAACAGAGAACTCGAAGAACTTATACCTTTCCATAGCAGAACTGAAGGACTTTGAGAATCTAGAACacttgtgtatgtatgtatataattgtataaaatTGTAAAGACGTTTTAATTATGTCAAAATGCAAAAAGTTAATGATATATAATCTGATTTTGTGGTAAAATGTGGCGTAATCCcgtatgtttaacagattttaaCCCCAGTATATTTAACTCCAGTGGTGCTGCTTTAGTTTTCCTGTAGTTTAACTGTAAATTTTAATATGCGTGTTATATAAAACAGAGTCTAGAGTCACACATCTGGCATTTTTACAGTCTTTTAccactttcattttctctttctcaCCTGTAATAGTCATGATCGCAAGTCTTTGACCTCAGGTGATTATTAGATATATTGATTTTATCGGTCTACAAACTTCACCGCGGATTGAACATCACACttccattcatttaaaaaaaacaacacataaatATTCTTTCTGTGCAAGAGTGTGAATTTTAAAACCACTTTTATGCCTGTACTTTTATCCCATTTGAATGCGGTTTCATCTTGTGTTTGACCATTGAAGCACCTTGAcgcttatttttttgttttgtttgtttgtttgttttgaacatCTTGTCCATTTTGGGTGAATTGCTGTGAAAAAAACACTAATTTAATGTCTGTACGTTGCAGATGTGAGCAGAAAAATGTTGAGTGACCAATACTGAATGTACTGTTAGGCGTGAAACGCTCTCAGACaatctttaatttaattaattcatcacAATACATCAACTAATTGCAAATTAATTTGCAGTTTACacaataaaactatcaaaaaaa
>TCONS_00041220
AAGAGCCGCAGCCAGGAGACACCATCATATATGTGGCGGGAGCGTTCGACCTCTTCCACATCGGTCATGTGGATTTCCTTGAGACGGTTCACAGACAAGCAGAGAAACCTTACGTCATCGTCGGACTGCACTTTGACCAGGAAGTGAACCGCTACAAAGGGAAAAACTACCCCATCATGAATATTCACGAGCGAACCTTGAGTGTGCTCGCTTGCAGATACGTGTCTGAGGTTGTCATCGGGGCTCCGTACGCTGTCGAAAAAGATCTTCTGGATCACTTTAAGGTGGATCTGGTGTGTCATGGGAAAACCAATGTATTTCCTGACGCAGATGGAACCGACCCTTATGCTGAGCCAAAGAAAAGAGGTATTTTCCGCATCCTGGACAGCAGCAACAATCTGACCACTGACGACATTGTTCAGAGAATCATTGAGAACAGGTTTGTAGGAAAATACGAGCAAAAACGCTCACTtgaaatatttatgaaaatatgcAACGATTTTTTTTGTACTATAGGCTGCAGTTTGAAGCCAGGAATCAGAAGAAGGAAGCGAAAGAAATGGCTGTTCTCCAGGCTTTGAAGCGTAAAGATGAATCTGTGAAAAGTGAAGCAGCTCTTGCGAAGAATTAACCAAACCAAGCTAATCGGTATTGTCGTAGAACAGAATCACCCCTGGACTCATTCAATTACATTCAGTAATGAACAGTaaggtattttaaaaaaa
>TCONS_00041221
TCTACGCTGCGCACACTCTCGGGGCGTCTGGAAGGGCGTAGAGATTTCGCCGGTCATTCATATCCGCACGGACCATTACTACCGCTTTTAACGCCAGTCAGGGAACTTCATAGGCTTCAAGAAGATGATCAGGAACGGAAGCCATGCGGTGGAGCAGGAGGACCGCGCACAGCCGAGCTCCTCGACCCACAGCCCCGAGAAGAGGAAGCGGGTGATCCGGGTGTGGTGTGACGGCTGctatgacatggtgcattacgGCCACTCAAACCAGTTACGCCAGGCCAAGGCGATGGGAGATTATCTGGTCGTAGGAGTTCACACAGACGAGGAAATAGCCAAGCACAAGGGTCCTCCAGTCTTCACACAGGCAGAGCGTTATAAAATGATACGGGCCATCAAGTGGGTGGATGAGATCGTGGAAGGGGCTCCGTATGTTACTACGCTGGAGACGCTGGACAAGTACAACTGCGATTTCTGCGTGCACGGAGATGACATCACATTGACTGTGGATGGTAAGGATACATACGATGAGGTGAAGAGAACAGGGAGATACCGGTAAAGTTCAACAGGCCTCGCACATACACCTGTGGCACACCACTAGATTCTCACACAGTGGTGGGTGCAACAatatctgtctttttttttttggtcaacagGGAGTGCAAACGCACACAAGGAGTGTCTACGACAGACCTAGTGGGTCGAATGCTCCTGTTAACAAAAGCGCACCACAGTAACATTGACAATGCAGCTTATCAAGTGCACACGGATAATTTTGGGAAGGGTCCTAAAGGACACAGCCCATGGACCGGCGTCTCTCAGTTCCTGCAGACGTCTCAAAAGATCATCCAG
>TCONS_00041222
TCTACGCTGCGCACACTCTCGGGGCGTCTGGAAGGGCGTAGAGATTTCGCCGGTCATTCATATCCGCACGGACCATTACTACCGCTTTTAACGCCAGTCAGGGAACTTCATAGGCTTCAAGAAGATGATCAGGAACGGAAGCCATGCGGTGGAGCAGGAGGACCGCGCACAGCCGAGCTCCTCGACCCACAGCCCCGAGAAGAGGAAGCGGGTGATCCGGGTGTGGTGTGACGGCTGctatgacatggtgcattacgGCCACTCAAACCAGTTACGCCAGGCCAAGGCGATGGGAGATTATCTGGTCGTAGGAGTTCACACAGACGGTAAGCTTCACACTTCATGTTTCTTCACTATAATGCTGTAATAATATGTAATGAGGCATTGTTTTTCACCTTCAGAGGAAATAGCCAAGCACAAGGGTCCTCCAGTCTTCACACAGGCAGAGCGTTATAAAATGATACGGGCCATCAAGTGGGTGGATGAGATCGTGGAAGGGGCTCCGTATGTTACTACGCTGGAGACGCTGGACAAGTACAACTGCGATTTCTGCGTGCACGGAG

Function

symbol description
pcyt2 Predicted to enable catalytic activity. Predicted to act upstream of or within phospholipid biosynthetic process. Is expressed in central nervous system; cranial ganglion; epiphysis; and ventral mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human PCYT2 (phosphate cytidylyltransferase 2, ethanolamine).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko00440 Phosphonate and phosphinate metabolism

ZFIN:

id description
ZDB-GENE-041010-132 Predicted to enable catalytic activity. Predicted to act upstream of or within phospholipid biosynthetic process. Is expressed in central nervous system; cranial ganglion; epiphysis; and ventral mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human PCYT2 (phosphate cytidylyltransferase 2, ethanolamine).

Ensembl:

ensembl_id ENSDARG00000043003

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041219 False 4042 mRNA 0.39 13 11596432 11614973
TCONS_00041220 False 725 mRNA 0.44 6 11599042 11606078
TCONS_00041221 False 852 lncRNA 0.52 6 11606092 11614953
TCONS_00041222 True 563 lncRNA 0.53 2 11609430 11614953

Neighbor

gene id symbol gene type direction distance location
XLOC_020956 gnav1 coding downstream 2018 11538392 ~ 11594414 (-)
XLOC_020955 slc26a11 coding downstream 76027 11497366 ~ 11520405 (-)
XLOC_020954 tspan7b coding downstream 103196 11440705 ~ 11493236 (-)
XLOC_020953 mid1ip1b coding downstream 157805 11436447 ~ 11438627 (-)
XLOC_020952 atp6ap2 coding downstream 459164 11123487 ~ 11137268 (-)
XLOC_020958 gcga coding upstream 2547 11617520 ~ 11626018 (-)
XLOC_020959 dpp4 coding upstream 13465 11628438 ~ 11648322 (-)
XLOC_020960 mettl21a coding upstream 42166 11657139 ~ 11661724 (-)
XLOC_020961 NA coding upstream 57216 11672189 ~ 11674421 (-)
XLOC_020962 NA coding upstream 82299 11697272 ~ 11698675 (-)
XLOC_020951 NA non-coding downstream 492161 11102905 ~ 11104271 (-)
XLOC_020948 NA non-coding downstream 498595 11082942 ~ 11097837 (-)
XLOC_020950 BX649485.2 non-coding downstream 505333 11090338 ~ 11091099 (-)
XLOC_020949 NA non-coding downstream 506732 11087404 ~ 11089700 (-)
XLOC_020945 NA non-coding downstream 669474 10922765 ~ 10926958 (-)
XLOC_020969 CR847870.5 non-coding upstream 969866 12584839 ~ 12584954 (-)
XLOC_020972 CR847870.3 non-coding upstream 1084148 12699121 ~ 12726556 (-)
XLOC_020975 NA non-coding upstream 1162916 12777889 ~ 12786441 (-)

Expression


Co-expression Network