G116429


Basic Information

Item Value
gene id G116429
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15838626 ~ 15840462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU133860
ATGTTTTAATACAAGTTGTTGAGCAGGTTAGCAAAGCAAACATAAATGAGTGTTAAACACATGAGTAAtgattcaataaaaaataaaaatcacattAACAAATACAGTCAGTATCATTCATTATGAAATTTAACAAAAATAAgtaattttctttaaaaaattatTAGAAGCCTAATAATGTGTTATATATCCTGTCAGTACTTCTAAAACAGCAGTTATGATTCTCTAGCCCCACTTGAACTTCTCCTGTAGGTCTAACACACCCTTAACCTTCCACTTGAAGTTGTCCTTTCAGATCCACAAAGGGAAGTCAACAAGATCCTAAGGATAGCAGCAAGGTAGCAGTTTGGAATCTGGCTATTTGATTTGCGCTCACATAGAATATAAACCAATATAAGATGTGGAAAGATGCCAGTCCTACATCACTCACTATAAGCATTAGCTGACCTAAAGACAACACTAAAATCTGGGTCAGACGAGCccataggcacagatctaggatcagcttcccgaACACTACTTCATTAGGGGGAAACTTTAAATCCGTGTCTATGGGCCAATTTAATCTATTAAAAGCATGACATTGGATCCACGAGTCACTTCCTCAGTGACTGACTGGAAAACGGTAATACATATCGTAATCATATTTCATGTTCTACTATGTACAAAATGTATATTATGGTTATATTACTagatatataatgatgtattataataatacttgTTTAACAGACAATGTCTAGGCAGAGTGGTGTGAGTAGGTGTGGCTGGGAACTGATGTCATATCCTCTCTGCTTCAATATCAAGCCTGGAACTCCAATTCTAAGTCATTCATAAATCACACAGGGACTTCCCTGGTATAgctgggggggagggagaggaactAAATCTGTTGCGGCATACGACAGGAAGTGAACTGGTATGAACTGTTAGGAACTagtgaaagagaggggaaaaggaatGTCATGTTCGTGTGCTGTCTGATACAGAAATCTTTCACCCATCTTTACAATAACTAGAAACACAAATAGTATCACACTGTCTCCACTACCAGGTCACACTATTACTCAACAGACCACAGATGAGTAATTTCCCCCCAACATAGTAATATGAGTTTGTATACTGTacatttgtatgtatgtgtgttaatATGCCTAGTCACTTATCATAGACTAAAAGTGCAGCTATGGGAATCTAGCTTCCACAGCAAGAGATCCACTGCTGCACTAAAACTGTCTCAGAATGTAATACAAGACAAGCTCAAGCCACTTGCCCATTACAATGCTTTAAAAATTAAAATACACTTTTAAAAACAGTTGGGCAGCTAAAAACACTAAGAACAACCACACTCACACCCCCGCGTGCACCCACCCAcgcaccacaacacacacacgggcaaaacacacacacacacacacacacacacacacacacacacacacccgcgcgCTCCCACCCACgcaccacaaaacacacacacgggcacaaaACATACCCCCAGACCCACGTACACACATTCACACTTTGGTTTCTTCTGCGTTGTCCACATTAACTGAGGTTCGTTGGGTCCTATTCCTGCTCCTGTCAACACATCTGTAA

Function

NR:

description
uncharacterized protein LOC110536013 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133860 True 1599 lncRNA 0.40 4 15838626 15840462

Neighbor

gene id symbol gene type direction distance location
LOC118937786 NA coding upstream 12096 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 36855 15787793 ~ 15801771 (+)
LOC110535991 LOC100194679 coding upstream 51207 15783609 ~ 15787419 (+)
LOC110535970 LOC106575371 coding upstream 55625 15759949 ~ 15783001 (+)
ecm1b ecm1 coding upstream 83331 15742330 ~ 15755295 (+)
LOC110536080 LOC106575458 coding downstream 183286 16023748 ~ 16035989 (+)
LOC110536089 LOC106575512 coding downstream 268349 16108811 ~ 16117559 (+)
chrnb2 LOC106575520 coding downstream 293308 16133770 ~ 16173038 (+)
LOC110536177 LOC100286671 coding downstream 449683 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 675619 16516081 ~ 16667428 (+)
G116416 NA non-coding upstream 21647 15816438 ~ 15816979 (+)
LOC110535950 LOC106575322 non-coding upstream 103732 15701186 ~ 15734894 (+)
G116368 NA non-coding upstream 138965 15699413 ~ 15699661 (+)
G116340 LOC106575260 non-coding upstream 189511 15644897 ~ 15649115 (+)
LOC110535866 gtpbp10 non-coding upstream 223672 15482391 ~ 15614954 (+)
G116442 NA non-coding downstream 25460 15865922 ~ 15866182 (+)
G116446 NA non-coding downstream 28176 15868638 ~ 15868837 (+)
G116454 il6ra non-coding downstream 39422 15879884 ~ 15917888 (+)
G116464 NA non-coding downstream 63187 15903649 ~ 15919088 (+)
G116514 NA non-coding downstream 146951 15987413 ~ 15987641 (+)
LOC110535842 LOC106605985 other upstream 386938 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 471837 15355848 ~ 15368210 (+)
G116224 NA other upstream 500924 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 502268 15329572 ~ 15336358 (+)
G116207 NA other upstream 567017 15271202 ~ 15271609 (+)
G117048 NA other downstream 343224 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 1155248 16995630 ~ 16998361 (+)
G117704 NA other downstream 1209670 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1232739 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1559551 17395343 ~ 17421816 (+)

Expression


Co-expression Network