G116454 (il6ra)


Basic Information

Item Value
gene id G116454
gene name il6ra
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15879884 ~ 15917888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU133891
CAAAACTATTTATTTCATTCTGACAAAATGATTTACAAAAACCCAATACTTTTTTTATAGACACACAAATGAATATTTACATCATTACTCTACTGGCTCATTTTCCCCAATGAGAACAAAATACTGCACACATCCAAACAGTGAAATAACAGGGCTTCTCCAGCCTGGACTAGGGGAACAGGGGGCTAGCGGTAAGGGCCTGGGATAGAGGGTAAGGGGTTTGTTTTAAGAGCAGGCATATCATTTGCTCTGGACCAGAAAATAGCTTGTGTTGTTAAAGCGAATAACTTccaccttctcctcttcttcctcctcttcatcctcctccttcctctcttcttcccgtGGGACGGGTTCCCCGTAGATTGGGTGGTCAAAGTTCACGAGGGCATGTCCTTCCTGGGTAGGCAGGGTTGTGACTGGGGGGGAGGGGcaagcaggagaggaggagacgggacTCAACCTCCACAGCTTAGACATGAACCTCTCCCTGtgtctgagagagcgagagagagaggagagagagagagagagagagagagagagtgggggggagagagaga

Function

symbol description
il6ra Enables interleukin-6 binding activity and interleukin-6 receptor activity. Involved in T-helper 17 cell lineage commitment. Acts upstream of or within interleukin-6-mediated signaling pathway. Located in cell surface. Part of interleukin-6 receptor complex. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; hemolymphoid system; and nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease; Huntington's disease; hyper IgE syndrome; obesity; and stomach cancer. Orthologous to human IL6R (interleukin 6 receptor).

NR:

description
IL-6R alpha precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133891 True 563 lncRNA 0.48 2 15879884 15917888

Neighbor

gene id symbol gene type direction distance location
LOC118937786 NA coding upstream 53354 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 78113 15787793 ~ 15801771 (+)
LOC110535991 LOC100194679 coding upstream 92465 15783609 ~ 15787419 (+)
LOC110535970 LOC106575371 coding upstream 96883 15759949 ~ 15783001 (+)
ecm1b ecm1 coding upstream 124589 15742330 ~ 15755295 (+)
LOC110536080 LOC106575458 coding downstream 105860 16023748 ~ 16035989 (+)
LOC110536089 LOC106575512 coding downstream 190923 16108811 ~ 16117559 (+)
chrnb2 LOC106575520 coding downstream 215882 16133770 ~ 16173038 (+)
LOC110536177 LOC100286671 coding downstream 372257 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 598193 16516081 ~ 16667428 (+)
G116446 NA non-coding upstream 11047 15868638 ~ 15868837 (+)
G116442 NA non-coding upstream 13702 15865922 ~ 15866182 (+)
G116429 NA non-coding upstream 39422 15838626 ~ 15840462 (+)
G116416 NA non-coding upstream 62905 15816438 ~ 15816979 (+)
LOC110535950 LOC106575322 non-coding upstream 144990 15701186 ~ 15734894 (+)
G116514 NA non-coding downstream 69525 15987413 ~ 15987641 (+)
G116526 NA non-coding downstream 94106 16011994 ~ 16013927 (+)
G116536 NA non-coding downstream 144080 16061968 ~ 16062376 (+)
G116541 NA non-coding downstream 151420 16069308 ~ 16071179 (+)
LOC110535842 LOC106605985 other upstream 428196 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 513095 15355848 ~ 15368210 (+)
G116224 NA other upstream 542182 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 543526 15329572 ~ 15336358 (+)
G116207 NA other upstream 608275 15271202 ~ 15271609 (+)
G117048 NA other downstream 265798 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 1077822 16995630 ~ 16998361 (+)
G117704 NA other downstream 1132244 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1155313 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1482125 17395343 ~ 17421816 (+)

Expression


Co-expression Network