G116526


Basic Information

Item Value
gene id G116526
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16011994 ~ 16013927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU133982
TATCCTCTGTGGGGTGTTGGCTTCAAACACATCTTCTGACAGGCTCTGTTCCCTGGCCACGCCTCTACCAGGGGTCTTGCTCCTGTCATAGGTGTCAGTTTTCCCATTAAGCTGATTGGTCAGGAGGGGGTTTGACCCTGTGGTGATCCCTACCCCGGACGTTGTGATAGGCTGAGAGTCCCTGGTGGGTGTCACTGATAGTCTGTGCTGGGGGAGAAAGACTTCAGCGTTATCTCTCCCTCGCTTCTCCACCTCCTTTTTCTTGTGTCCTTTTCCTTCGACATCAGTCCATTTCTCTTTTTCCTGAGCCATGCTCCCCACCCTTACTCTCTCCTTTTCGCTGTCTTCACTACTTCCACTCTTTTTGCCCACAGTGTTTGTcccctccttttcccctctctcctgtttGTCTTCTAATGGAGGGGATAGTGAGGGGTCCCTAATGCACACGGATGACCCCTGCACtaagggtgtgtgtgagggtttGTATGAGAGTGTGGGTGTGGTACACCCTGACACTGGAGACAGTGAGGGGCTCAAACCAGACACCTTGACTGCACTATTCTGATGTCTCTgcggtgtgtgtgtagtgtgtgtggtgttctgttctactaggggtgtgtgtgagagcaggCCGTTCCTCTCCCCCCTGGATAATCCACTGAGGGGGGAGGAAAcgggggaggaaaagggggaggagaggggggagacaaaGACAGAGTCTGTGGTGGACATCCTGCGAATGGCTGCTGTatcccccccatccctctccaATAGAGACCAGTCTCCTTCCGGTGCTGAGAGACGCTTGGTTCTGGTTGAGTCCTTCACATCTCTGTTAGTAGCTTTATCAGTTCCAATAGTCCCATAGAGCTTCTGTATCCGGTCCCAGATACTCTGACCCCTGGAGGATCCAAGAGATCCACCGGCTGGTTTTCTGGTTCCAGACCCAGGACCAGGACTAGAACTCAGCCTGGTGGGGAGGGACTGGCCCCCACTGGCCCTCTCCAGAGATATAGCCACATACGCTAGACCCACAGGGGACACCCCTTCACCAAGGGAACACCCTGACCCCCGAACGGGGCTCCTCACTTCCCCTGGTCCAACTGAGTTAAAGGCCTTCACCCTGGACAACACATTGCTCTCTCCTGCCCTCCTACTCTCCAAACTCTCTGCTCGTTTAAGTGTGGACCCCCCTAGGTTCCCAGAAAACCTCAGCAGCCCAGTCCTGAGCCCCTCGCCAGGGCTAGCCCCCCTTCCACTCCAGTCTAAACTCTTACTCCTTTTGGGCAGGTTTAGCCTTCTCCACTCTGTCCTGCCCCGGTCTCCAGCCAACTTCCCTGAGATGCCACAGTTTCCTCCCCTGTCACTGCCATCCTCTGGGATCACGTCCCTCACACCACCATTCTGTCTCAACTGTCCGGTGGCCATTGTGGAGCCTGTTGTGTATTTCCCCTCACTGGGGAATGGGTCCAGTGCGAGTTGAATTATTCCAAACGTAGTATGTAGTAAAAGGTGACAGTTTAAGAATCCCAGTAATCCTTTTTGCAGAGTTTAACCACAGGTCAAAATCATCACAGAAGTCTTCGACAGCAGAACAGGCCTGGTAGCAGCACAGGCCTGGTAGCAGCACAGGTCTGGTAGGAAAGGTGTTTGTCTGTCCCAGCAGAAATGGTGGTTGAACTGTGGTTGAACTGCAATCTTCTCATGTTTGGGGCTCCAGATATCAACAGACACTCACTTGTATATCCACAGGTTTGAGATTCCATCCATGAAGATTCTCTGCATTTCTGTCTCCCACACACTCAGAGATGATTGTTAgttctacttccctccctctctgtccattcctctctgTGGTGTCGGCTCCAGTAGTCAAACAGAGGTCCTCAGCAGTGAAGTTTTCCTGGGTGAGCGGTCACACACAAGCCTCA

Function

NR:

description
pro-interleukin-16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133982 True 1934 lncRNA 0.51 1 16011994 16013927

Neighbor

gene id symbol gene type direction distance location
LOC118937786 NA coding upstream 185464 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 210223 15787793 ~ 15801771 (+)
LOC110535991 LOC100194679 coding upstream 224575 15783609 ~ 15787419 (+)
LOC110535970 LOC106575371 coding upstream 228993 15759949 ~ 15783001 (+)
ecm1b ecm1 coding upstream 256699 15742330 ~ 15755295 (+)
LOC110536080 LOC106575458 coding downstream 9821 16023748 ~ 16035989 (+)
LOC110536089 LOC106575512 coding downstream 94884 16108811 ~ 16117559 (+)
chrnb2 LOC106575520 coding downstream 119843 16133770 ~ 16173038 (+)
LOC110536177 LOC100286671 coding downstream 276218 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 502154 16516081 ~ 16667428 (+)
G116514 NA non-coding upstream 24353 15987413 ~ 15987641 (+)
G116464 NA non-coding upstream 92906 15903649 ~ 15919088 (+)
G116454 il6ra non-coding upstream 94106 15879884 ~ 15917888 (+)
G116446 NA non-coding upstream 143157 15868638 ~ 15868837 (+)
G116442 NA non-coding upstream 145812 15865922 ~ 15866182 (+)
G116536 NA non-coding downstream 48041 16061968 ~ 16062376 (+)
G116541 NA non-coding downstream 55381 16069308 ~ 16071179 (+)
G116542 NA non-coding downstream 59992 16073919 ~ 16075195 (+)
G116543 NA non-coding downstream 63107 16077034 ~ 16080072 (+)
LOC110535842 LOC106605985 other upstream 560306 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 645205 15355848 ~ 15368210 (+)
G116224 NA other upstream 674292 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 675636 15329572 ~ 15336358 (+)
G116207 NA other upstream 740385 15271202 ~ 15271609 (+)
G117048 NA other downstream 169759 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 981783 16995630 ~ 16998361 (+)
G117704 NA other downstream 1036205 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 1059274 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1386086 17395343 ~ 17421816 (+)

Expression


Co-expression Network