G116543


Basic Information

Item Value
gene id G116543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16077034 ~ 16080072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU134006
GACTTCGATTGCTACGCAATATTTAATTCAATAGAAAACAGATTGGTATTGTGAAGTACAAATTCAGTGTAAAATGACTAATCATGTACCACCTTCTGTACTCAGTTACAACAAAGCCATACAGTATGGTAGTCTAGTGCTTCATATATACTAAACAGtaagtactgtatgtgtagggtaTAAGAAACACTAGAGCACCATATTCTATACAAAATATTTCAAGCCAACTGAACAGTTGGAAGACATATGAACATTGCAACAATTTCACTTACAGTGGTAACTACTGTATCACTGAATGAAAATACAAGCTCTCAGATCTCCCCCAAAACCAATTCAATAGAAACCAATCAATTAGAAAACTCTATCCAGAGTACACTTTTAAGGCATAGTGATTAAAATCTTCACAAGCTTCTCTGAGTATTAATTGTAAGGACTGCATAGAAGTTGTGCACGGATGCTACAAATACAatgtgtaaagtgtgtgtgtatgaagaaATGGTGAGAGAGGATTGGTATCAGAGCAAACTCCATACATGCATCTGTAGTGGCAGGCAGTCAAGTAGTAGAACATACAGCAGAATAGGAATCAAACTGTCAGATATGGTTTCTAAAACAGTGATAACTATGATATCACATTCAGCAGAATATTGTTGATTTCATGAATTAGAAAAACTATCTACATTTGTTCATCATTCTCATATATCTGGCAGCATTTGGTCCAACCGTGTTTTAAAAAGTACACTTGCATATCAGATCTCCATTAAGGACTGGATGGAATAGTGTTTGCTGTGCATCAGGTCCGTGTGACAGGGCACCAGTAGGATCAGATGAAACACTGTTCACCCTGTGAAAGCAGACATTAACCAGCTACAGTGTTAAAtagtcacagtacatgttggcgtGGTTACTTCTATCACTATTCAGTCAGTGTAATCATGTGACCAAACTCATTTTCACTAAGAGTAATATTGAAAAGAACCATAATAATGACCCTATTAAACAGTCCCACAGAGTAATTCTGTGTATTAAAGAGCACCATACTAATTACAGTATCATAGCATACCATAGAGTACCACAGAGTAATGATGAAATTGAAGAGTGCAACAGCGTACTGCCGTTTAGTCCTGTAAGTCAGTCCGTCCTGTAAGTGATTGTAAGTGCTTTAGACAGTGAGTCATCCTGCCTGTTCTTCTCAGAATGTGTTAGTGTTCTGTTACTGTATTCATGTTTATTGTCTATTATTATTATAGTGagtcatcctcctcatcctctccttctccctgaacctgtgatccctctctccctcctttataCAGTGTTTTTATAGCAGGTCTATAGACCTGTCCCAGTGTATTGTACCTGTGTATAGTAGATGTCTATCTGTAGTGCTTAGAATAaccccctccctccaaccctgtaGTGCTTAAAATACTCCCTTtaatccacctccctccttcctttctctATAGTGCTCAGAATAGCccttgttctcctcctcctcctaccaccactacactacccccccccccccccctccctccctctagcagGAGCTGGTGTGAAGGTtgccactgcccccccccccccccctccctctagcAGGAGCTGGTGTGAAGGTtgccactaccccccccccccctccatctagCAGGAGCTGGTGTGAAGGTTGCcactacccctccccctccctctagcAGGAGCTGGTGTGAAGGTTGCCactgcccctccccctcccaggAGCTGGTGTGAAGGTtgccactaccccccccccccctccatctagCAGGAGCTGGTGTGAAGGTTGCCactaccctcccccctccctctagcAGGAGCTGGTGTGAAGGTTGCCactacccccccctccctctagcAGGAGCTGGTGTGAAGGTTGCCACTACCCTCCCCCCCCTCTAGCAGGAGCTGGTGTGAAGGTTGCcactacccctccccctccctctagcAGGAGCTGGTGTGAAGGTTGCcactacccctccccctccctctagcAGGAGCTGGTGTGAAGGTTGCcactacccctccccctccctctagcAGGAGCTGGTGTGAAGGTTGCcactacccctccccctccctctagcAGGAGCTGGTGTGAAGGTTGCcactacccctccccctccctctagcAGGAGCTGGTGTGAAGGTTGCcactacccctccccctccctctagcAGGAGCTGGTGTGAAGGTTGCCActacccctcccccccctctagCAGGAGCTGGTGTGAAGGTTGCcactacccctccccctcccaggaGCTGGTGTGAAGGTTGCcactacccctccccctcccaggaGCTGGTGTGAAGGTtgccactacccccccccccccctccctctagcAGGAGCTGGTGTGAAGATTGCTCCCAGTGAGGATGGACGTGATGCTGGAGGGGTTGTACAGGCCTTCATCATCTTCGTCAGAGCTCAGAGCCGACGAGTCCAGGGCCTGACGCTGCGCCTGCTGCACCTTCCTCCTGAAACACACCACCATCAGCTTCAGAAATGTTATCTTCATCATCTATTGTTCACTATAACAGAGGTGGGTCTCAGCAAACGTGTGGGAGTAGACAGTTGACTTCTACAGTAGACA

Function

NR:

description
cingulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134006 True 2619 lncRNA 0.48 2 16077034 16080072

Neighbor

gene id symbol gene type direction distance location
LOC110536080 LOC106575458 coding upstream 41045 16023748 ~ 16035989 (+)
LOC118937786 NA coding upstream 250504 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 275263 15787793 ~ 15801771 (+)
LOC110535991 LOC100194679 coding upstream 289615 15783609 ~ 15787419 (+)
LOC110535970 LOC106575371 coding upstream 294033 15759949 ~ 15783001 (+)
LOC110536089 LOC106575512 coding downstream 28739 16108811 ~ 16117559 (+)
chrnb2 LOC106575520 coding downstream 53698 16133770 ~ 16173038 (+)
LOC110536177 LOC100286671 coding downstream 210073 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 436009 16516081 ~ 16667428 (+)
LOC118936591 LOC106574320 coding downstream 653261 16733333 ~ 16747286 (+)
G116542 NA non-coding upstream 1839 16073919 ~ 16075195 (+)
G116541 NA non-coding upstream 5855 16069308 ~ 16071179 (+)
G116536 NA non-coding upstream 14658 16061968 ~ 16062376 (+)
G116526 NA non-coding upstream 63107 16011994 ~ 16013927 (+)
G116545 LOC106575505 non-coding downstream 1944 16082016 ~ 16082650 (+)
G116548 NA non-coding downstream 10490 16090562 ~ 16092319 (+)
G116590 NA non-coding downstream 89013 16169085 ~ 16169354 (+)
G116560 NA non-coding downstream 93189 16173261 ~ 16174047 (+)
G116561 NA non-coding downstream 94047 16174119 ~ 16174776 (+)
LOC110535842 LOC106605985 other upstream 625346 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 710245 15355848 ~ 15368210 (+)
G116224 NA other upstream 739332 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 740676 15329572 ~ 15336358 (+)
G116207 NA other upstream 805425 15271202 ~ 15271609 (+)
G117048 NA other downstream 103614 16182890 ~ 16185784 (+)
LOC110536275 s10i other downstream 915638 16995630 ~ 16998361 (+)
G117704 NA other downstream 970060 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 993129 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1319941 17395343 ~ 17421816 (+)

Expression


Co-expression Network