G116561


Basic Information

Item Value
gene id G116561
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16174119 ~ 16174776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU134033
agccagccagacagccagacagccagcaaAATATACCTCCAGCTGAGTGTTAACTGAGTAATCCCCTTCCATGACCTTGCATGACCTTGCGTCACTCTGTGGGACACAGGCTTTTCACAGTGGGGTAGTCCAGGGTATTCCCAAGTGAACCCCAGGACATCCCCAGGAGAACCCCAGGACATCCCCAGGAGAGGCCCAGGACATCCCCAGGAGAGGGCCAGGAGAACCCCAGGACATCCCCAGGAGAGGCCCAGGACATCCCCAGGAGAGGTCCAGGATAACCCCAGGACATCCCCAGAAGAACCCCAGGACATCCCCAGGAAAGGCCCAGGAGTGTGTAAAGCCTATTAGAGAGCTGTGGAGTCCTGTGGAGTGGAGACCTCTCTTTCCCTTCAGGACCTGGCTGTAGAGGTGTGACGCAAACAGAGTGCTgtccatcccctccctcctccctgtttctccacccctctcttttcttccttctctccccttcattaccttgttctctctctcctctgtcctttcttcttgtctctctctcctctgtccctctctctttgtctctgtgtgtttctctattCCCCACTCAGAGGAGAGCGTTGTCCTCCAATAACCGCTCACAGCTTTGTTCCTGTC

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit beta-2-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU134033 True 636 lncRNA 0.55 2 16174119 16174776

Neighbor

gene id symbol gene type direction distance location
chrnb2 LOC106575520 coding upstream 1081 16133770 ~ 16173038 (+)
LOC110536089 LOC106575512 coding upstream 56560 16108811 ~ 16117559 (+)
LOC110536080 LOC106575458 coding upstream 138130 16023748 ~ 16035989 (+)
LOC118937786 NA coding upstream 347589 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 372348 15787793 ~ 15801771 (+)
LOC110536177 LOC100286671 coding downstream 115369 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 341305 16516081 ~ 16667428 (+)
LOC118936591 LOC106574320 coding downstream 558557 16733333 ~ 16747286 (+)
LOC110520867 LOC106606111 coding downstream 584960 16759736 ~ 16767223 (+)
LOC110536210 LOC106574226 coding downstream 696766 16871542 ~ 16875899 (+)
G116560 NA non-coding upstream 72 16173261 ~ 16174047 (+)
G116590 NA non-coding upstream 4765 16169085 ~ 16169354 (+)
G116548 NA non-coding upstream 81800 16090562 ~ 16092319 (+)
G116545 LOC106575505 non-coding upstream 91469 16082016 ~ 16082650 (+)
G116543 NA non-coding upstream 94047 16077034 ~ 16080072 (+)
G117048 NA non-coding downstream 8114 16182890 ~ 16185784 (+)
G117053 s10ag non-coding downstream 15258 16190034 ~ 16264925 (+)
G117059 NA non-coding downstream 24193 16198969 ~ 16201327 (+)
G117069 NA non-coding downstream 39257 16214033 ~ 16217388 (+)
G117078 NA non-coding downstream 47522 16222298 ~ 16222741 (+)
LOC110535842 LOC106605985 other upstream 722431 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 807330 15355848 ~ 15368210 (+)
G116224 NA other upstream 836417 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 837761 15329572 ~ 15336358 (+)
G116207 NA other upstream 902510 15271202 ~ 15271609 (+)
LOC110536275 s10i other downstream 820934 16995630 ~ 16998361 (+)
G117704 NA other downstream 875356 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 898425 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1225237 17395343 ~ 17421816 (+)

Expression


Co-expression Network