G117048


Basic Information

Item Value
gene id G117048
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16182890 ~ 16185784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU134637
ggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactactatgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactatgaatatcccagcagtaggtttatgatgtgttcaacacaaaacactgaatatcccagcagtaggtttatgatgtgttcaacacaaaacactatgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactatgaatatcccagcagtaggtttatgtgctcaacacaaaacactatgaatatcccagcagtaggtttatgtgctcaacacaaaacact
>TU134636
cacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgatgtgttcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgtgctcaacacaaaacactatgaatatcccagcagtaggtttatgtgctcaacacaaaacactatgaatatcccagcagtaggtttatgatgtgttcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactatgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgatgtgctcaacacaaaacactgaatatcccagcagtaggtttatgccTTTTGCAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106585773

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134637 False 396 lncRNA 0.39 3 16182890 16185701
TU134636 True 585 TUCP 0.58 2 16183686 16185784

Neighbor

gene id symbol gene type direction distance location
chrnb2 LOC106575520 coding upstream 9852 16133770 ~ 16173038 (+)
LOC110536089 LOC106575512 coding upstream 65331 16108811 ~ 16117559 (+)
LOC110536080 LOC106575458 coding upstream 146901 16023748 ~ 16035989 (+)
LOC118937786 NA coding upstream 356360 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 381119 15787793 ~ 15801771 (+)
LOC110536177 LOC100286671 coding downstream 104444 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 330380 16516081 ~ 16667428 (+)
LOC118936591 LOC106574320 coding downstream 547632 16733333 ~ 16747286 (+)
LOC110520867 LOC106606111 coding downstream 574035 16759736 ~ 16767223 (+)
LOC110536210 LOC106574226 coding downstream 685841 16871542 ~ 16875899 (+)
G116561 NA non-coding upstream 8114 16174119 ~ 16174776 (+)
G116560 NA non-coding upstream 8843 16173261 ~ 16174047 (+)
G116590 NA non-coding upstream 13536 16169085 ~ 16169354 (+)
G116548 NA non-coding upstream 90571 16090562 ~ 16092319 (+)
G116545 LOC106575505 non-coding upstream 100240 16082016 ~ 16082650 (+)
G117053 s10ag non-coding downstream 4333 16190034 ~ 16264925 (+)
G117059 NA non-coding downstream 13268 16198969 ~ 16201327 (+)
G117069 NA non-coding downstream 28332 16214033 ~ 16217388 (+)
G117078 NA non-coding downstream 36597 16222298 ~ 16222741 (+)
G117083 NA non-coding downstream 41980 16227681 ~ 16229049 (+)
LOC110535842 LOC106605985 other upstream 731202 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 816101 15355848 ~ 15368210 (+)
G116224 NA other upstream 845188 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 846532 15329572 ~ 15336358 (+)
G116207 NA other upstream 911281 15271202 ~ 15271609 (+)
LOC110536275 s10i other downstream 810009 16995630 ~ 16998361 (+)
G117704 NA other downstream 864431 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 887500 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1214312 17395343 ~ 17421816 (+)
G117735 NA other downstream 1270064 17455765 ~ 17458022 (+)

Expression


Co-expression Network