G117059


Basic Information

Item Value
gene id G117059
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16198969 ~ 16201327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU134657
gtattagactaagcatatgtgagttgatgatgttgaaatggtgctggaatagtggaggctcctgttttctttgtgacttgcagtaactctgtggttctaaatcaatagttgtttattagtccaaaaatgtctaaaacattaacttgctttaCCATGCTGTAGGTGATGTTactgtacatgcaatatgctttgtggacttcactggacagaggttgctatctgaaaagaaaaacaaaagtttggttgaatttattctgcactgtgtcttcttattgtctcggccttaggcctatatatcactgtgtcaaggcatatgaactaacaggttacagagcaaacaacacaattatcacaacacataggttgtaatatggcttttatTTTTCTGTCTTGGCTTCCCCATTGATTTTACCCTGCTACTGATTCTCCCTAGCCTGGGAGCCAGATATTCTGCTGCTTTAGCCAACTCCTTCCCTGCTGCCATACCAAACATCATAACCAAGCATCATACCAAACATCATACCAAAAATCATAGCAATCATCATTGGCTGAAGCAGTAAGACTGACAACCTCCTGGACAACACTAGCAGTCTCATTCACAACAGGGCCAGAATAAATTCTGCTTACACACCAAGATTCTAAATTTACACAGACACAGTCCGATGCCAtcactgctctgtgtgtgtgtgtgtgtatgcagtatTAGTTTTAGTTTGGCGAGATATAATTATACTTTCAAAACAAGGAGGGAATTCTGGCAGcgacaaaaggagagagagagagagagaaagaaagacagagggagggagggaggtcagGTAGTCATAGATACTATAGTTGTATGATTCATCCATGTTTTATTTTGCTGGACCAATCCTCCATAgctttagagagggagggagagagagagagactaaggtCAGGTAGTCATAGATACTATAGTTGTATGATTCATCCATGTTTTATTTTGCTGGACCAATCCTCCATAGCTTTAGCAAACACTTGACCATTTAGAAACACAACATGGGGATAACCATACCACTAGAATAACCTATCATTGTAATCATATGGTAGTAACAGAACAAGACATGGAGACATCCTATTGGATAAAGCCGCCGTGTTGATTTGCTAGTCGTCCAATCAGCTGCCAGAACTCCAGGAAGTTGAGCTCTCCGTCATTGTTCTCGTCAATTGAGTCCATGAGTCGGTCGATGACAGCTGGGTCATCAGCGTTCTACATGGGGGCAATAAGGGCCGTCAGAAATCACTAGTTAAGAggcttcctttcctcttctcAGATTCAGAACCACACTGACTGATCTGATTGTGCTTGTCAGAAAAGCCATGTGATGAGAAGAAACCTTTCTACCATCTGTGGTCATGAGAAGGGAACAAGAAAATTAAGCTATTTGATGGGTGTCACTATTTGGCCATTCTAGAAAGGATGGCGGTACAGCACTTTACAAGCACAAATGCAAATGTCTATTTTAGCATGGCCATACTGATATACCACAGGAGGCAGAGGTTGGAAGGACGAGAGGCATCTGTGCAGTCTATGTCCCCATCTAGAGGAAATGAAGTGGACCACAAACTGATGTTGTGGCTCACCAACTCTGCTCCTAGAGAGCTAAAGGGTGGATGCTTTTGTTACAGCCCAGCACTAATCATCAAGCTGAATCAGTTGTATTATAGCTGGACTGGAATAAAAGCCTGTGATCACTGGTTATTATAGTATTACTCAAACGTTACCACAGTATAATTAACATGTAATTACCTTAACGAAGTTGGGGAGTTGTGTTTTGACCAGGTTCTGGAACTCATCTCTGCTCAGTGTGTCTGAGGATCCATCACTTCCAGCAAACGCCTTGAACTGGGACACGAGTACACCAATGGCTGACTCCatcactgacagagagagaggaagaatggaGAAGAGGTAGTGTTCTAATGGGACTAAACAGAATACAAtacagacacagaggagaggtTATTGAACTGAAAAATCATAAATACGTAGATAAAATACTACAGACCAAGTCAGGTCAACGACAGCATTGAGAAAAAACAGCAAGTgttacagaggag
>TU134658
gtattagactaagcatatgtgagttgatgatgttgaaatggtgctggaatagtggaggctcctgttttctttgtgacttgcagtaactctgtggttctaaatcaatagttgtttattagtccaaaaatgtctaaaacattaacttgctttaCCATGCTGTAGGTGATGTTactgtacatgcaatatgctttgtggacttcactggacagaggttgctatctgaaaagaaaaacaaaagtttggttgaatttattctgcactgtgtcttcttattgtctcggccttaggcctatatatcactgtgtcaaggcatatgaactaacaggttacagagcaaacaacacaattatcacaacacataggttgtaatatggcttttatTTTTCTGTCTTGGCTTCCCCATTGATTTTACCCTGCTACTGATTCTCCCTAGCCTGGGAGCCAGATATTCTGCTGCTTTAGCCAACTCCTTCCCTGCTGCCATACCAAACATCATAACCAAGCATCATACCAAACATCATACCAAAAATCATAGCAATCATCATTGGCTGAAGCAGTAAGACTGACAACCTCCTGGACAACACTAGCAGTCTCATTCACAACAGGGCCAGAATAAATTCTGCTTACACACCAAGATTCTAAATTTACACAGACACAGTCCGATGCCAtcactgctctgtgtgtgtgtgtgtgtatgcagtatTAGTTTTAGTTTGGCGAGATATAATTATACTTTCAAAACAAGGAGGGAATTCTGGCAGcgacaaaaggagagagagagagagagaaagaaagacagagggagggagggaggtcagGTAGTCATAGATACTATAGTTGTATGATTCATCCATGTTTTATTTTGCTGGACCAATCCTCCATAgctttagagagggagggagagagagagagactaaggtCAGGTAGTCATAGATACTATAGTTGTATGTTTTATTTTGCTGGACCAATCCTCCATAgctttagagagggagggagagagagagagagactaaggtCAGGTAGTCATAGATACTATAGTTGTATGATTCATCCATGTTTTATTTTGCTGGACCAATCCTCCATAGCTTTAGCAAACACTTGACCATTTAGAAACACAACATGGGGATAACCATACCACTAGAATAACCTATCATTGTAATCATATGGTAGTAACAGAACAAGACATGGAGACATCCTATTGGATAAAGCCGCCGTGTTGATTTGCTAGTCGTCCAATCAGCTGCCAGAACTCCAGGAAGTTGAGCTCTCCGTCATTGTTCTCGTCAATTGAGTCCATGAGTCGGTCGATGACAGCTGGGTCATCAGCGTTCTACATGGGGGCAATAAGGGCCGTCAGAAATCACTAGTTAAGAggcttcctttcctcttctcAGATTCAGAACCACACTGACTGATCTGATTGTGCTTGTCAGAAAAGCCATGTGATGAGAAGAAACCTTTCTACCATCTGTGGTCATGAGAAGGGAACAAGAAAATTAAGCTATTTGATGGGTGTCACTATTTGGCCATTCTAGAAAGGATGGCGGTACAGCACTTTACAAGCACAAATGCAAATGTCTATTTTAGCATGGCCATACTGATATACCACAGGAGGCAGAGGTTGGAAGGACGAGAGGCATCTGTGCAGTCTATGTCCCCATCTAGAGGAAATGAAGTGGACCACAAACTGATGTTGTGGCTCACCAACTCTGCTCCTAGAGAGCTAAAGGGTGGATGCTTTTGTTACAGCCCAGCACTAATCATCAAGCTGAATCAGTTGTATTATAGCTGGACTGGAATAAAAGCCTGTGATCACTGGTTATTATAGTATTACTCAAACGTTACCACAGTATAATTAACATGTAATTACCTTAACGAAGTTGGGGAGTTGTGTTTTGACCAGGTTCTGGAACTCATCTCTGCTCAGTGTGTCTGAGGATCCATCACTTCCAGCAAACGCCTTGAACTGGGACACGAGTACACCAATGGCTGACTCCatcactgacagagagagaggaagaatggaGAAGAGGTAGTGTTCTAATGGGACTAAACAGAATACAAtacagacacagaggagaggtTATTGAACTGAAAAATCATAAATACGTAGATAAAATACTACAGACCAAGTCAGGTCAACGACAGCATTGAGAAAAAACAGCAAGTgttacagaggag

Function

NR:

description
protein S100-A11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134657 False 2085 lncRNA 0.43 3 16198969 16201327
TU134658 True 2181 lncRNA 0.42 2 16198969 16201327

Neighbor

gene id symbol gene type direction distance location
chrnb2 LOC106575520 coding upstream 25931 16133770 ~ 16173038 (+)
LOC110536089 LOC106575512 coding upstream 81410 16108811 ~ 16117559 (+)
LOC110536080 LOC106575458 coding upstream 162980 16023748 ~ 16035989 (+)
LOC118937786 NA coding upstream 372439 15820843 ~ 15826530 (+)
znf687a LOC106575274 coding upstream 397198 15787793 ~ 15801771 (+)
LOC110536177 LOC100286671 coding downstream 88818 16290145 ~ 16298549 (+)
LOC110512627 efna3 coding downstream 314754 16516081 ~ 16667428 (+)
LOC118936591 LOC106574320 coding downstream 532006 16733333 ~ 16747286 (+)
LOC110520867 LOC106606111 coding downstream 558409 16759736 ~ 16767223 (+)
LOC110536210 LOC106574226 coding downstream 670215 16871542 ~ 16875899 (+)
G117048 NA non-coding upstream 13268 16182890 ~ 16185784 (+)
G116561 NA non-coding upstream 24193 16174119 ~ 16174776 (+)
G116560 NA non-coding upstream 24922 16173261 ~ 16174047 (+)
G116590 NA non-coding upstream 29615 16169085 ~ 16169354 (+)
G116548 NA non-coding upstream 106650 16090562 ~ 16092319 (+)
G117069 NA non-coding downstream 12706 16214033 ~ 16217388 (+)
G117078 NA non-coding downstream 20971 16222298 ~ 16222741 (+)
G117083 NA non-coding downstream 26354 16227681 ~ 16229049 (+)
G117088 NA non-coding downstream 34625 16235952 ~ 16236717 (+)
G117067 NA non-coding downstream 48111 16249438 ~ 16252646 (+)
LOC110535842 LOC106605985 other upstream 747281 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 832180 15355848 ~ 15368210 (+)
G116224 NA other upstream 861267 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 862611 15329572 ~ 15336358 (+)
LOC110536275 s10i other downstream 794383 16995630 ~ 16998361 (+)
G117704 NA other downstream 848805 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 871874 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 1198686 17395343 ~ 17421816 (+)
G117735 NA other downstream 1254438 17455765 ~ 17458022 (+)

Expression


Co-expression Network