G117335 (LOC100286671)


Basic Information

Item Value
gene id G117335
gene name LOC100286671
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16291830 ~ 16298545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135001
TGACAGATTTATATTTTATTACAAACCATGTAAATCCATATCATTAGATTCTAAgccactcacacatacacattttacactcaaacacacaccttTCCTTCAAAATTCACTCATTCTGCGATCAGTCTCTGGTTCTTTTGTCTGTTCCACTTTCCTCAATCTGTttcctctttctttcactctcctcttccttccttccttccctcttctcttcttttcAGAAGTTGCCTGTATGTTCAATTTTGtctaatggttaaggttgggaTTTGAGCAGGATatgctgatcctaggtctgtccCTACAAGCATCTCTTACCTGGAGCCCCAAACAGGAAGGGCGGATAAAAGATCAGGACATGACGTTACAAACAAGGAAGACACATCATTCACGTGAGTCGCGCTCCATTTCCTCATTCTCCAAGTGGTGGGCAGGTCTATAGCGGCTCACGCCCCTCCCATCCACCACTTGGAGGGCAGGGTTTCGGCAGGTGTTGTCCATGCTGCCTAATGAGGTGTACCCTTTATCATACAGAATACAGTAGGGCACATATAGAGTCCTCAGGAATGACCAGATATCATGATACGTCCAGTcCAGCAGGGGGTTGACCCTCATGTAGTCCGGCCATCCAGGGTCAGTGAGACAcatgggtgtgagtgtgtgtgagtagggGTCACTCCTCCTGGTGCCCATACACACAGCTCTCAGCTCCGgcctcctctcctgtacctcactCAATGCCTGCCGAATACTGCCCTCCACTGAGAAAATCTCCAGGTCATATCTCTTTATTGTGTCCTGGAGgaatctctccatctctgggAAGGGAGAGACAATGCGAATGTACAGAGCCTTTACCTTGTCCTTACCCTCCGGATACCGCcgtttcAGTGCAGCGTAATATAGATGTAGAAGAGCAGTGCAGTCTTTGCCTCCATTGAAGCCCACACAGATCTCCCCTGCCGAATACTGATCCAGAGCAGTCTCTATGGTCTTCAGAGCGTTTGCCACTTTATCACCCAGTGGTGTGCcgctgttGGCCAGTGTGTAGACCTCCTCAGTAGCGATGGACACAGGGTCCGTGACCAGGGGAACCACACTGCCTTTGGGCATCTCCTCCAGCAGCTGAGCCCGGgccttctccacctcctcagaGCTGTCTGAATCCAGCACCAGCCTGACCCGGTGGTAGTTACTGAGCCAGTCAGGGTAGGAGCCCAGAGCCACCCTCTTCCCCCAGCCCGCCTGCAGGCGGGTCAGCACCGGGGCGATCAACGCCTCGTCTGCATCCACAAACACCTCTCGTGTGTGGAAGGTGGTCCCTGAGCCAGCGAACAGGTGCTCCAGACCGTTGAAGGCTCTCTCCAACAGAGACGGGATCCCAGGGAAGATGTAGACGTTACGCACACTCACCAGTGGGTAGCGTAGTGGCTTTCCAGTCTGAGGGTCAGTGCCGTAGTTGAGCTTGGCCGAGCGGGGGACCATGGCTAGCTTCATGGCTGCATTCTCCCTATCCACCACCCCAAAGAACTCCTCCACCAAACGGGTCAGCTCCGGGTGGGCATGCAGTTCCTCCTCGAACGCCAAGGCAACACTCTCGAAGGTGACGTCGTCGTGGGTGGGGCCTATTCCCCCAGAGGTGAGCAGGTGTGTGTACTGTGGGGCCAGGAGGGCCACCTCCTTAGAGATGACCTCCTGCTGGTCAGGGATTACTGTGACACGCTGGACACACACTCCCAGCTTCCTCAGCGCTCGCGACAGGAAGGCACTGTTAGTGTCCAC

Function

NR:

description
FAD synthase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135001 True 1779 lncRNA 0.54 8 16291830 16298545

Neighbor

gene id symbol gene type direction distance location
LOC110536161 LOC106593005 coding downstream 2650 16249431 ~ 16289180 (-)
LOC110536166 NA coding downstream 44411 16245769 ~ 16247419 (-)
LOC110536154 LOC106575541 coding downstream 46274 16217471 ~ 16245556 (-)
LOC110536122 LOC106573839 coding downstream 83467 16203014 ~ 16208363 (-)
LOC110536110 LOC106573847 coding downstream 90282 16199987 ~ 16201548 (-)
LOC110536191 LOC106605933 coding upstream 24873 16323418 ~ 16447506 (-)
LOC118937848 NA coding upstream 132238 16430783 ~ 16433481 (-)
LOC118937856 NA coding upstream 244939 16543484 ~ 16544221 (-)
LOC118937862 NA coding upstream 246097 16544642 ~ 16545379 (-)
LOC110536202 LOC105024462 coding upstream 537074 16835619 ~ 16870366 (-)
G117354 NA non-coding downstream 32624 16256747 ~ 16259206 (-)
G117333 NA non-coding downstream 74478 16214036 ~ 16217352 (-)
G117327 NA non-coding downstream 102202 16189373 ~ 16189628 (-)
G117041 NA non-coding downstream 116305 16175228 ~ 16175525 (-)
G117040 NA non-coding downstream 117797 16171188 ~ 16174033 (-)
G117362 NA non-coding upstream 3003 16301548 ~ 16301846 (-)
G117407 NA non-coding upstream 115173 16413718 ~ 16414705 (-)
G117427 NA non-coding upstream 155671 16454216 ~ 16454447 (-)
G117431 NA non-coding upstream 162398 16460943 ~ 16462505 (-)
LOC110536103 s10ag other downstream 96213 16189940 ~ 16195762 (-)
LOC110534219 LOC106575505 other downstream 183854 16079813 ~ 16108032 (-)
LOC110518702 atp8b2 other downstream 331828 15898225 ~ 15982097 (-)
LOC110536013 NA other downstream 434126 15778980 ~ 15857764 (-)
G118273 NA other upstream 529126 16827671 ~ 16828022 (-)
G118303 NA other upstream 635024 16933569 ~ 16934290 (-)
G118319 NA other upstream 696975 16916621 ~ 16998362 (-)
G118392 NA other upstream 752636 17051181 ~ 17055124 (-)
LOC110534246 LOC106605885 other upstream 795789 17094247 ~ 17121323 (-)

Expression


Co-expression Network