XLOC_020963 (crygs1)


Basic Information

Item Value
gene id XLOC_020963
gene name crygs1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11710467 ~ 11714158 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041229
CCACTTTACAGAGAGATGTCTGGGTATAAAAGAGCTGCTGTGGGATGGGCCTGAACCAGCACAGCTCCACAACTCTACCCCCTTCCACAGGTGCCGCCACCAGACGAACCTCTGCAGAATGGGCCGGGTGAGTACGAAGGTGATCAGGACACTCTGCTCCAATTATTGATACTACTTTTTGATAGTCGATGCAGAGATGGCTGCaatagcatttttttattatttatatatatatatatatatatatatatatatatatatatatatatatatatatacatacagtagatTGTAATATTGTATTCTTATATAATACATTTGAATGATAACAAACCTGTAATGCAACCAGACATAGTTCCTTACAATAAAAccctacaataaaataaaatttcactgTTTCCTCCATGCAGATAATTTTCTTCGAGGACAAGAATTTCCAGGGTCGTCGACACGAGTGCGATAGCGACTGTTCGGACTTCCATACGTACCTGAACCGCTGTAACTCCATCCGCGTGGAGAGTGGGGCCTGGGTGGTCTATGAGAGACCCAACTTCATAGGCTACCAGTATGTTCTGACCAGGGGCGAATATCCGGATTACCAACGCTGGATGGGTCTGAACGACCGCCTCTGCTCCTGCAAGATGATCCACTTCGTAAGCGGTAGTGAGCATAAGATCCAACTCTATGACAAAGGAGATTTTGCCGGCCAGGTGTACGAGACCACCGAGGATTGTCCATCCGTGGTGGAGCGTTTCCGGACACGCGAGGTCCACTCCTGTAAGGTACTGGATGGGATCTGGATCTTCTACGAGCACCCAAACTATAGGGGGCGCCAGTATCTGCTGCAGAAGGGGGAATATCGTAAGCCCGTGGACTGGGGCGCAGTTTGCCCCACGGTTCAGTCCTTCAAACGCTTGACGGAGTGACGTCTGACCTGTAAATCCATCCATCTGCAGTTCTTCTTTACCTCCAAAACACCCGACCACGAAAGCAGCAACATGCCTGTGCTGAATTAATAAACGTGTGGTTGCAAATCAAGCTGTTGTTTGTTGACTTATTTTATACGTTTTAAACTACAAACTACA
>TCONS_00041230
GAACCAGCACAGCTCCACAACTCTACCCCCTTCCACAGGTGCCGCCACCAGACGAACCTCTGCAGAATGGGCCGGATAATTTTCTTCGAGGACAAGAATTTCCAGGGTCGTCGACACGAGTGCGATAGCGACTGTTCGGACTTCCATACGTACCTGAACCGCTGTAACTCCATCCGCGTGGAGAGTGGGGCCTGGGTGGTCTATGAGAGACCCAACTTCATAGGCTACCAGTATGTTCTGACCAGGGGCGAATATCCGGATTACCAACGCTGGATGGGTCTGAACGACCGCCTCTGCTCCTGCAAGATGATCCACTTCGTAAGCGGTAGTGAGCATAAGATCCAACTCTATGACAAAGGAGATTTTGCCGGCCAGGTGTACGAGACCACCGAGGATTGTCCATCCGTGGTGGAGCGTTTCCGGACACGCGAGGTCCACTCCTGTAAGGTACTGGATGGGATCTGGATCTTCTACGAGCACCCAAACTATAGGGGGCGCCAGTATCTGCTGCAGAAGGGGGAATATCGTAAGCCCGTGGACTGGGGCGCAGTTTGCCCCACGGTTCAGTCCTTCAAACGCTTGACGGAGTGACGTCTGACCTGTAAATCCATCCATCTGCAGTTCTTCTTTACCTCCAAAACACCCGACCACGAAAGCAGCAACATGCCTGTGCTGAATTAATAAACGTGTGGTTGCAAATCAA
>TCONS_00041231
ACCAGCACAGCTCCACAACTCTACCCCCTTCCACAGGTGCCGCCACCAGACGAACCTCTGCAGAATGGGCCGGGTGAGTACGAAGATAATTTTCTTCGAGGACAAGAATTTCCAGGGTCGTCGACACGAGTGCGATAGCGACTGTTCGGACTTCCATACGTACCTGAACCGCTGTAACTCCATCCGCGTGGAGAGTGGGGCCTGGGTGGTCTATGAGAGACCCAACTTCATAGGCTACCAGTATGTTCTGACCAGGGGCGAATATCCGGATTACCAACGCTGGATGGGTCTGAACGACCGCCTCTGCTCCTGCAAGATGATCCACTTCGTAAGCGGTAGTGAGCATAAGATCCAACTCTATGACAAAGGAGATTTTGCCGGCCAGGTGTACGAGACCACCGAGGATTGTCCATCCGTGGTGGAGCGTTTCCGGACACGCGAGGTCCACTCCTGTAAGGTACTGGATGGGATCTGGATCTTCTACGAGCACCCAAACTATAGGGGGCGCCAGTATCTGCTGCAGAAGGGGGAATATCGTAAGCCCGTGGACTGGGGCGCAGTTTGCCCCACGGTTCAGTCCTTCAAACGCTTGACGGAGTGACGTCTGACCTGTAAATCCATCCATCTGCAGTTCTTCTTTACCTCCAAAACACCCGACCACGAAAGCAGCAACATGCCTGTGCTGAATTAATAAACGTGTGGTTGCAAAT

Function

symbol description
crygs1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract 20 multiple types. Orthologous to human CRYGS (crystallin gamma S).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050223-4 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract 20 multiple types. Orthologous to human CRYGS (crystallin gamma S).

Ensembl:

ensembl_id ENSDARG00000042992

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041229 False 1085 mRNA 0.45 2 11710467 11714158
TCONS_00041230 False 703 mRNA 0.54 3 11710514 11714106
TCONS_00041231 True 710 mRNA 0.54 3 11710517 11714104

Neighbor

gene id symbol gene type direction distance location
XLOC_020962 NA coding downstream 11792 11697272 ~ 11698675 (-)
XLOC_020961 NA coding downstream 36046 11672189 ~ 11674421 (-)
XLOC_020960 mettl21a coding downstream 48743 11657139 ~ 11661724 (-)
XLOC_020959 dpp4 coding downstream 62145 11628438 ~ 11648322 (-)
XLOC_020958 gcga coding downstream 84449 11617520 ~ 11626018 (-)
XLOC_020964 krt222 coding upstream 3271 11717429 ~ 11729350 (-)
XLOC_020965 ptpn4b coding upstream 63895 11778053 ~ 11833334 (-)
XLOC_020966 pth2rb coding upstream 184503 11898661 ~ 11955907 (-)
XLOC_020967 tmem163b coding upstream 380326 12094484 ~ 12161095 (-)
XLOC_020968 zranb3 coding upstream 503762 12217920 ~ 12337781 (-)
XLOC_020951 NA non-coding downstream 606196 11102905 ~ 11104271 (-)
XLOC_020948 NA non-coding downstream 612630 11082942 ~ 11097837 (-)
XLOC_020969 CR847870.5 non-coding upstream 870681 12584839 ~ 12584954 (-)
XLOC_020972 CR847870.3 non-coding upstream 984963 12699121 ~ 12726556 (-)
XLOC_020975 NA non-coding upstream 1063731 12777889 ~ 12786441 (-)
XLOC_020979 NA non-coding upstream 1219132 12933290 ~ 12940709 (-)
XLOC_020980 NA non-coding upstream 1235662 12949820 ~ 12950292 (-)

Expression


Co-expression Network