G117250


Basic Information

Item Value
gene id G117250
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16648870 ~ 16651426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU134879
tgttcagcctcctgtATTCCTCATTTCTCCTCctataacattacagattaggggacagctacctctactgttcagcctcctgtcttcctcattcctcatcctataacattacagattaggagacagctacctctaccggttcagcctcctgtcttcctcattccttctcctttaacattacagattaggagacagctacctcaactgttcagcctcctgtcttcctcatttctcctcctataacattacagattaggagacagctacctctactgttcagcctcctgtcttcctcattcctcctcctataactatacagattaggagacagctacctctacctgttcagcctcctgtcttcctcattcctcctcctttAACATTAAagattaggagacagctacctctacttttcagcctcctgtcttcctcattccacctcctataacattacagattaggagacagctacctctactgtccagcctcctgtcttcctcattcctcctcctataacattacagattaggagacagctacctctacctgttcagcctcctgtcttcctcattcctcctcctataacattaCTTATTAGGATACAGCTACCGCTACTGTTCTGCCTCCTGTGTTCCTTattcctcctcctataacattacagactaggagacagctacctctactgttcagcctcctgtcttcctcattcctcctcttagAACATTACAGActaggagacagctacctctactgttcacctcctgtcttcctcattcctcctcctataacattacagattaggagacagctacctcaactgttcagcctcctgtcttcctcattcctcctcctataacattacagattaggagacagctacctcaactgttcagcctcctgtcttcctcattcctcctcctataacattacagattaggagacagctacctctactgttcagcctcctgtATTCCTCATTCCTCATCCAataacattacagattaggagacagctacctctactgttcagcctcctgttttcctcattcctcctcctataacattacagattaggagacagctacctctactgttcagccaccagtcttcctcattcctcctcctttaacattacagattaggagacagctacctctactgttcagcctcctgtcttcctcattccttCTCCTAGAACATTACAGActaggagacagctacctctactgttcagcctcctgtcttcctcattccaACTCCTTtaacattacagattaggagacagctacctctactgttcaccctcctgtcttcctcattcctcctcctataacattacagattaggagatatctacctctactgttcagcctcctgttttcctcattcctcctcctataacattacagattaggagacagctacctGTTCAGCCACCTGTCTTCTTAATTCCTCCTCTACACCTCAcctctctctgacacctctaccactctatctctctgacatctctaccccctctctctctctgacacctctaccattctctctctctgacacctcgACCACTCGTTCTCTCTGACACCTCTATCCCCTATCTTTCTGgcacctctaccccctctctctctgccacctctaCCACCCgctctctctgacacctctaccaccttctctgtctgacacctctaccaccctctgtCTCTGGCACCTCTacgaccctctctctctgacacctctaccacattctctctctgacacctctaccaccctctctctctgacacctctaccaccctctctctctgacacctctacgaccctctcactctgacacctctaccaccttctctctctgacacctctaccaccttctctctctggcacctctacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134879 True 1886 lncRNA 0.46 2 16648870 16651426

Neighbor

gene id symbol gene type direction distance location
LOC110536177 LOC100286671 coding upstream 350321 16290145 ~ 16298549 (+)
chrnb2 LOC106575520 coding upstream 475832 16133770 ~ 16173038 (+)
LOC110536089 LOC106575512 coding upstream 531311 16108811 ~ 16117559 (+)
LOC110536080 LOC106575458 coding upstream 612881 16023748 ~ 16035989 (+)
LOC118937786 NA coding upstream 822340 15820843 ~ 15826530 (+)
LOC118936591 LOC106574320 coding downstream 81907 16733333 ~ 16747286 (+)
LOC110520867 LOC106606111 coding downstream 108310 16759736 ~ 16767223 (+)
LOC110536210 LOC106574226 coding downstream 220116 16871542 ~ 16875899 (+)
LOC110536226 kcp2 coding downstream 224568 16875994 ~ 16879352 (+)
LOC110536234 LOC106575974 coding downstream 238152 16889578 ~ 16891184 (+)
G117247 NA non-coding upstream 3959 16644201 ~ 16644911 (+)
G117210 NA non-coding upstream 92448 16555747 ~ 16556422 (+)
G117187 NA non-coding upstream 139265 16509118 ~ 16509605 (+)
G117163 NA non-coding upstream 185938 16460998 ~ 16462932 (+)
G117149 NA non-coding upstream 208127 16439176 ~ 16440743 (+)
G117251 NA non-coding downstream 3338 16654764 ~ 16656434 (+)
G117254 NA non-coding downstream 9840 16661266 ~ 16663706 (+)
G117320 NA non-coding downstream 137074 16788500 ~ 16798757 (+)
G117322 NA non-coding downstream 138175 16789601 ~ 16800145 (+)
G117048 NA other upstream 463086 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1197182 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1282081 15355848 ~ 15368210 (+)
G116224 NA other upstream 1311168 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1312512 15329572 ~ 15336358 (+)
LOC110536275 s10i other downstream 344284 16995630 ~ 16998361 (+)
G117704 NA other downstream 398706 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 421775 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 748587 17395343 ~ 17421816 (+)
G117735 NA other downstream 804339 17455765 ~ 17458022 (+)

Expression


Co-expression Network