XLOC_020967 (tmem163b)


Basic Information

Item Value
gene id XLOC_020967
gene name tmem163b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12094484 ~ 12161095 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041240
GGCAGTGCGCGCCTTCTCCGCTCGCGTCCAGGTGTGACATTTTTCGGATGCTTCTAGACATTTGAACCCGGGCCCCAATCATCATGACGGACTCCTCCTCTGCCTCTGACCCCACGGCCGGTCCTGTAGACCCCGGTCCCGCTCCTTCTGCCCCGGATCCAGCTCTGGAGGATCCAGCATCGACTCCCGCCAACGGACACCATCCGAATCAAGCGGACAGTTTTAACATGGAGCAGCAGATGAAGATCGGGGAGCCGGAGGATAACGCAGGGCTCCTGGAGAGCAGCATGCGGCTCAAACCCCATGAGGCCCAAAGCTACAGAAAAAAAGCACTATGGGTGTCGTGGGTCTCCATTGTGGTGACGATGATCTTGGCGATCGCTGCGTTCACTGTTTCTATAATGCGGCATAGTGCGTCAGCATTTGGGTTTGCATTTGACGCCACACTGGATGTCCTGTCCTCCATTATTGTGCTTTGGCGATACAGTAATGCTGCAGCCGTTCATTCAGCACACAGAGAATACATAGCATGTGTTATCCTTGGGGTCGTCTTCATCCTGTCGGCCATAACAATCTTGGTGAAAGCCATCCATGATCTTGCCACAAAACTGGAACCAGAAGTGGATGATTTCCTCTACAGCGTGTCTGTGATCAGTGGGGTGGTCTGCACGGTTCTGTGTGTCTGCAAGTTCATGCTGGGTAAAGTTCTGACCAGCAGAGCCCTCATCACTGACGGGTTTAACTCCCTGGTTGGAGGAGTGATGGGTTTCTCCATCCTGATCAGCGCAGAGGTGTTCAAACACGAGCCTAGCGTCTGGTTTCTGGACGGCACCATCGGCATCCTCATCGGCCTCATCATTCTGGCCTACGGAGTCAAGTTGTTAAAGGACATGGTTCCTCGCATCAGGCAGACGAGACACTACGAGCGCTTCGAGTAGAGTTCAGATTCTGGTTGATTCAACGCAAGGAAAACACTCCTGTGGAGAGTGAAAAATACACGcatacacgaacacacacacttcTCCCTGCCTCAGGGCAAAGCTCCCCCTGTAAATAAGGATCTGAAAGGGAAATACTGAATACTGCACACTGAAATATAGTATTGTATAAAGCCCAAGCCAGAAACTAGAACATCCGAGATCTAAAATATAAGCAATTAAGTTGTGTGTTTCTAAGAGGGTGAAAAAAGGAGGCTTTATGGATATTCCTCACCTCAGTGTGATGTTTTACATATGATTTGTGCGGATGATCACAaaacaacaatacatttaatgTTATACATGTTCAGGTTATAGGGGGGAAGAGGTTTATCAGGTAAACTTAACACA
>TCONS_00041241
ttccacctctgCATATTACACACACAGGTCTGTGTAAAAGACTTgttgtttatgttattattattgtttaaaaaaatgcaaaaatctaTTTGAGTCTCGTCcaacatattaataattaaaaataattatataaatgtattattagtaGCCTGATAAGAGCTATTTTACGTTATTTAAGATTATTCCTTTGTCAGCAAGAGGATTTTATTTGGACAGACTTGTTTACAGCTCAGTCAATAACTGCAATAAACACAAGATGTCGCTAATGCACCAATACTTCACTGATTCAGTTaggaattactttttatttataatacacaCCTTTTTACCAGCAAATGAATCAATCTAAATAATCTATAAACCAGTCCATCTCCAAGTTGCTAAACTATtgatgatgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataggaaaaacaacacacataaaaaatcacaataatatgGTCTACTGACCAAAAATATATGTAGCCTATTTTCTCTCAGATGTAGGCGATTTAAACGAGTGTTTTACGAGTGGATTTAACACGAGCAGAGGGTTATTTGCTCACGCGTCACCAGCTCCCCCCCAGACAGAACCTCACGTCcacaacttttttatttaatgtccATACTTCCCGCATGTTTCTGACACCTTGCCGTTGTTTATAAAGTACAGTTCGCACGTGCGTGTTTTTAATTAGCGCGCGCGTGTGTGAGAGAGCGCGCGCGCCCGTCCGCGATGCTCTGAACGGCTCCCCGGCAGTGCGCGCCTTCTCCGCTCGCGTCCAGGTGTGACATTTTTCGGATGCTTCTAGACATTTGAACCCGGGCCCCAATCATCATGACGGACTCCTCCTCTGCCTCTGACCCCACGGCCGGTCCTGTAGACCCCGGTCCCGCTCCTTCTGCCCCGGATCCAGCTCTGGAGGATCCAGCATCGACTCCCGCCAACGGACACCATCCGAATCAAGCGGACAGTTTTAACATGGAGCAGCAGATGAAGATCGGGGAGCCGGAGGATAACGGGCTCCTGGAGAGCAGCATGCGGCTCAAACCCCATGAGGCCCAAAGCTACAGAAAAAAAGCACTATGGGTGTCGTGGGTCTCCATTGTGGTGACGATGATCTTGGCGATCGCTGCGTTCACTGTTTCTATAATGCGGCATAGTGCGTCAGCATTTGGGTTTGCATTTGACGCCACACTGGATGTCCTGTCCTCCATTATTGTGCTTTGGCGATACAGTAATGCTGCAGCCGTTCATTCAGCACACAGAGAATACATAGCATGTGTTATCCTTGGGGTCGTCTTCATCCTGTCGGCCATAACAATCTTGGTGAAAGCCATCCATGATCTTGCCACAAAACTGGAACCAGAAGTGGATGATTTCCTCTACAGCGTGTCTGTGATCAGTGGGGTGGTCTGCACGGTTCTGTGTGTCTGCAAGTTCATGCTGGGTAAAGTTCTGACCAGCAGAGCCCTCATCACTGACGGGTTTAACTCCCTGGTTGGAGGAGTGATGGGTTTCTCCATCCTGATCAGCGCAGAGGTGTTCAAACACGAGCCTAGCGTCTGGTTTCTGGACGGCACCATCGGCATCCTCATCGGCCTCATCATTCTGGCCTACGGAGTCAAGTTGTTAAAGGACATGGTTCCTCGCATCAGGCAGACGAGACACTACGAGCGCTTCGAGTAG
>TCONS_00041242
TCTGAACGGCTCCCCGGCAGTGCGCGCCTTCTCCGCTCGCGTCCAGGTGTGACATTTTTCGGATGCTTCTAGACATTTGAACCCGGGCCCCAATCATCATGACGGACTCCTCCTCTGCCTCTGACCCCACGGCCGGTCCTGTAGACCCCGGTCCCGCTCCTTCTGCCCCGGATCCAGCTCTGGAGGATCCAGCATCGACTCCCGCCAACGGACACCATCCGAATCAAGCGGACAGTTTTAACATGGAGCAGCAGATGAAGATCGGGGAGCCGGAGGATAACGGGCTCCTGGAGAGCAGCATGCGGCTCAAACCCCATGAGGCCCAAAGCTACAGAAAAAAAGCACTATGGGTGTCGTGGGTCTCCATTGTGGTGACGATGATCTTGGCGATCGCTGCGTTCACTGTTTCTATAATGCGGCATAGTGCGTCAGCATTTGGGTTTGCATTTGACGCCACACTGGATGTCCTGTCCTCCATTATTGTGCTTTGGCGATACAGTAATGCTGCAGCCGTTCATTCAGCACACAGAGAATACATAGCATGTGTTATCCTTGGGGTCGTCTTCATCCTGTCGGCCATAACAATCTTGGTGAAAGCCATCCATGATCTTGCCACAAAACTGGAACCAGAAGTGGATGATTTCCTCTACAGCGTGTCTGTGATCAGTGGGGTGGTCTGCACGGTTCTGTGTGTCTGCAAGTTCATGCTGGGTAAAGTTCTGACCAGCAGAGCCCTCATCACTGACGGGTTTAACTCCCTGGTTGGAGGAGTGATGGGTTTCTCCATCCTGATCAGCGCAGAGGTGTTCAAACACGAGCCTAGCGTCTGGTTTCTGGACGGCACCATCGGCATCCTCATCGGCCTCATCATTCTGGCCTACGGAGTCAAGT

Function

symbol description
tmem163b Predicted to enable zinc ion binding activity. Predicted to act upstream of or within transmembrane transport and zinc ion transport. Predicted to be located in early endosome membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in membrane. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human TMEM163 (transmembrane protein 163).

GO:

id name namespace
GO:0099180 zinc ion import into synaptic vesicle biological_process
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0030285 integral component of synaptic vesicle membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-410 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within transmembrane transport and zinc ion transport. Predicted to be located in early endosome membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in membrane. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human TMEM163 (transmembrane protein 163).

Ensembl:

ensembl_id ENSDARG00000088227

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041240 False 1328 mRNA 0.50 8 12094484 12160283
TCONS_00041241 False 1747 mRNA 0.44 8 12094874 12161095
TCONS_00041242 True 891 mRNA 0.54 7 12100425 12160298

Neighbor

gene id symbol gene type direction distance location
XLOC_020966 pth2rb coding downstream 138577 11898661 ~ 11955907 (-)
XLOC_020965 ptpn4b coding downstream 261150 11778053 ~ 11833334 (-)
XLOC_020964 krt222 coding downstream 365134 11717429 ~ 11729350 (-)
XLOC_020963 crygs1 coding downstream 380326 11710467 ~ 11714158 (-)
XLOC_020962 NA coding downstream 395809 11697272 ~ 11698675 (-)
XLOC_020968 zranb3 coding upstream 56825 12217920 ~ 12337781 (-)
XLOC_020969 CR847870.5 coding upstream 423744 12584839 ~ 12584954 (-)
XLOC_020970 cep70 coding upstream 443207 12604302 ~ 12626207 (-)
XLOC_020971 adarb1a coding upstream 480485 12641580 ~ 12693837 (-)
XLOC_020972 CR847870.3 coding upstream 538026 12699121 ~ 12726556 (-)
XLOC_020961 NA non-coding downstream 420063 11672189 ~ 11674421 (-)
XLOC_020951 NA non-coding downstream 990213 11102905 ~ 11104271 (-)
XLOC_020950 BX649485.2 non-coding downstream 1003385 11090338 ~ 11091099 (-)
XLOC_020949 NA non-coding downstream 1004784 11087404 ~ 11089700 (-)
XLOC_020975 NA non-coding upstream 616794 12777889 ~ 12786441 (-)
XLOC_020979 NA non-coding upstream 772195 12933290 ~ 12940709 (-)
XLOC_020980 NA non-coding upstream 788725 12949820 ~ 12950292 (-)

Expression


Co-expression Network