G117638


Basic Information

Item Value
gene id G117638
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16902902 ~ 16903245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135370
gttaatgaacaccatttcAACTAGGAAGAAACGAATAGGTTGGGGACTGTGAAAACAGATAAGGTCGTTAGCCTATGGTTGACCCTAcagaaacttagctctggggtttttagataagacagtgagtgcattcctaagttttctgttaattagaactgtcagctcagtggtgattgataatgttgaggggtcaaaagttacctgggagtgtgttagtaagttagaatgaacttttcacctcactttgtcccggtcgagaggaggggattctgttaaagtaatgaaatgacgtcatgatctgtatataaactgttgttcgtggttaagtggcagcgcgctccgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135370 True 344 lncRNA 0.47 1 16902902 16903245

Neighbor

gene id symbol gene type direction distance location
LOC110534232 LOC106575974 coding upstream 5078 16896300 ~ 16897824 (+)
LOC110536234 LOC106575974 coding upstream 11718 16889578 ~ 16891184 (+)
LOC110536226 kcp2 coding upstream 23550 16875994 ~ 16879352 (+)
LOC110536210 LOC106574226 coding upstream 27003 16871542 ~ 16875899 (+)
LOC110520867 LOC106606111 coding upstream 135679 16759736 ~ 16767223 (+)
LOC118936967 LOC106606015 coding downstream 9605 16912850 ~ 16917506 (+)
LOC110536252 LOC100136538 coding downstream 29460 16932705 ~ 16934871 (+)
LOC118936983 LOC106574877 coding downstream 45186 16948431 ~ 16950598 (+)
LOC118937935 LOC106606010 coding downstream 66809 16970054 ~ 16972862 (+)
LOC110536275 s10i coding downstream 92385 16995630 ~ 16998361 (+)
G117636 NA non-coding upstream 1413 16901279 ~ 16901489 (+)
G117632 NA non-coding upstream 8905 16887027 ~ 16893997 (+)
G117609 NA non-coding upstream 49175 16847610 ~ 16853727 (+)
G117610 NA non-coding upstream 52544 16848256 ~ 16850358 (+)
LOC110536287 LOC106605892 non-coding downstream 123633 17026878 ~ 17055189 (+)
G117701 NA non-coding downstream 138276 17041521 ~ 17042910 (+)
G117708 NA non-coding downstream 161928 17065173 ~ 17065377 (+)
G117711 NA non-coding downstream 165340 17068585 ~ 17072226 (+)
G117750 NA non-coding downstream 260940 17164185 ~ 17164471 (+)
G117048 NA other upstream 717118 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1451214 15448845 ~ 15451856 (+)
LOC110535783 LOC106606004 other upstream 1536113 15355848 ~ 15368210 (+)
G116224 NA other upstream 1565200 15337430 ~ 15337702 (+)
LOC110535811 acbd7 other upstream 1566544 15329572 ~ 15336358 (+)
G117704 NA other downstream 146887 17050132 ~ 17050839 (+)
G117714 LOC106605886 other downstream 169956 17073201 ~ 17073701 (+)
LOC110520798 fam189b other downstream 496768 17395343 ~ 17421816 (+)
G117735 NA other downstream 552520 17455765 ~ 17458022 (+)

Expression


Co-expression Network