G118339


Basic Information

Item Value
gene id G118339
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16954838 ~ 16956282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU136291
ggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGGGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGGGGTATGTaaagaaccaccagtcaggaggatacagacagctcaggGGTATGTaaagaaccaccagtcaggaggatacagacagctcagaGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatacagacagctcaagatgTATGTAAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagatgTATGTAAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgcttcGATACGCATAAACAtagacttttta
>TU136292
ggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGGGGTATGTAAAGAACCACCAGTCATGAGGATATAGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatacagacagctcaggGGTATGTaaagaaccaccagtcaggaggatacagacagctcagaGGTATGTAAAGAACCACCAGTCaggaggatacagacagctcaggGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGGGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatacagacagctcaagatgTATGTAAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagatgTATGTAAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgcttcGATACGCATAAACAtagacttttta
>TU136295
ggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGGGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGGGGTATGTAAAGAACCACCAGTCATGAGGATATAGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatacagacagctcaggGGTATGTaaagaaccaccagtcaggaggatataGACAGCTCAGAGGTATGTaaagaaccaccagtcaggaggatacagacagctcaagatgTATGTAAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagatgTATGTAAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgtaAAGAACCActatacagacagctcaagaggtatgcttcGATACGCATAAACAtagacttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136291 False 738 lncRNA 0.42 4 16954838 16956282
TU136292 False 914 lncRNA 0.43 3 16954838 16956282
TU136295 True 633 lncRNA 0.43 4 16954838 16956282

Neighbor

gene id symbol gene type direction distance location
LOC110536202 LOC105024462 coding downstream 84472 16835619 ~ 16870366 (-)
LOC118937862 NA coding downstream 409459 16544642 ~ 16545379 (-)
LOC118937856 NA coding downstream 410617 16543484 ~ 16544221 (-)
LOC110536191 LOC106605933 coding downstream 507332 16323418 ~ 16447506 (-)
LOC110519673 LOC106605887 coding upstream 116936 17073218 ~ 17141568 (-)
LOC110534246 LOC106605885 coding upstream 137965 17094247 ~ 17121323 (-)
LOC110520880 LOC106605923 coding upstream 421730 17378012 ~ 17382684 (-)
LOC118944171 NA coding upstream 424537 17380819 ~ 17380955 (-)
LOC118944170 NA coding upstream 424971 17381253 ~ 17381388 (-)
G118312 NA non-coding downstream 49153 16905477 ~ 16905685 (-)
G118310 NA non-coding downstream 50670 16903819 ~ 16904168 (-)
G118308 NA non-coding downstream 53312 16901177 ~ 16901526 (-)
G118304 LOC106575974 non-coding downstream 56915 16890389 ~ 16897923 (-)
G118298 NA non-coding downstream 71060 16883568 ~ 16883778 (-)
G118360 NA non-coding upstream 48497 17004779 ~ 17005003 (-)
G118363 NA non-coding upstream 49962 17006244 ~ 17012736 (-)
G118370 NA non-coding upstream 56808 17013090 ~ 17013337 (-)
G118371 NA non-coding upstream 57172 17013454 ~ 17013864 (-)
G118392 NA non-coding upstream 94899 17051181 ~ 17055124 (-)
G118303 NA other downstream 20548 16933569 ~ 16934290 (-)
G118273 NA other downstream 126816 16827671 ~ 16828022 (-)
LOC110536122 LOC106573839 other downstream 749421 16203014 ~ 16208363 (-)
LOC110536103 s10ag other downstream 759221 16189940 ~ 16195762 (-)
LOC110534219 LOC106575505 other downstream 846862 16079813 ~ 16108032 (-)
G118319 NA other upstream 39238 16916621 ~ 16998362 (-)
G118456 LOC100380853 other upstream 287842 17244124 ~ 17252276 (-)
G118494 NA other upstream 374833 17331115 ~ 17332028 (-)

Expression


Co-expression Network