G118398 (adar)


Basic Information

Item Value
gene id G118398
gene name adar
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17151988 ~ 17161387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU136380
ACAAAGCCGGTCTTTATAATCACTTAAAACTTGACAGAATTTCCATACATAATAAAACAAAATGCTTTCTGTCATCCACTTGATAAAACGTTTCAAAAAAATAGTCAATAGAAAATCAATTTTAGGCATGACTTACaaaatatatacataatatatacatatacatacacacacagagatatatacaTACCCTACACAAACATTGCTATTGCATATACATCTGTGTATTTATGTATTTGTATGTACATGATGTATATATTGCTTCACCCTTGAATGTATTTGATCAGACTGAactaaaacataaaaacaaacCAGTCTTTCTCCCTGTCCACATAAAACCTGCCGGCCACATTCTGGCCACGCTAGGAAGGACAAGAGTGCAAAGCCTTTCTTCTCTTTTTTTTATCACAACTACGAGTAATCACTTATCCTAACCTGAACTTTGACCCCCCCTAACATGAATCCTAAAATGAGAACAAGTAGCTGATTTACTTGTTCTCAGCAGTTCTCAACGTCACCGTTGTCCTTTCTGACGTGGCCCTCGAGTGGCAACACCAAAAACCTCAAGAACAATAGCGATACACACCACATAGGACACAACAATAACAGAATAATTATGATCTAGGCTAGTTAGTCATCAAATCTATGTTACAGTCGAGAGTTATGGGATGGACCAGGCTGTGACCTGTAGACGTAGCCATAGCATTAACAACAGTGTAAAGGGGTGGGTTACTAGGTCGGGGAGTAGCTAAACGTTACAAGgctggtttatatatatatataaagtgtgATCACTACTATCCATGCTCAGGCTGATAAGTACAGATTAAACTAGTCATGCGTGATTGAATGGCTGGCTGGCGAGTAGGACAGGGTCAGGTGTAGGGTGTCTGAACTAGAGAGACAGGGCTGTGTGCGTGAGGGCAGGGAGGGTTTGTCCTGTAGGTAAATGTGAGGATAGAGTGTCCTGGGGCTACTGTTACAGTGGAGCAGTAGTGCATGCTATGCAGCTCTGAATGTCACCACATCACAGTCATCATGCTTACTATCCCCctattctcccctctctttctatatTCTGTTGCTTTTGTGTAGCAGTAGcaaccccttctctctccatctctcttgctGCTGTCTGACCCTCACCCCTTGGGCTGGCCTGTtatccccttccctccctccatctcagtAACTCTGTCCTTTCCAATCTGTCTGACCTCTACCCCTTCTTTCAAGAAGATCCAGTACTCGCTGCTagctcctctcccccccccccccccccctgtcctccAGGCTCATGTCCTTCTAGCcaaccctcccttctccctcctttctACATGGCCTGTGTGTATGCACTACTACCCCACTGGCTGCTGTTATAGTCAGTGGTTGTGCTTCCATagctattgttgttgttgtatccCTGGTTGCTATTAGCAACACTTCCTGCCCCTTGGCCGTCCGAGGCTGCTGCTTCGTCAAAGCTCTTCTCCTCCAATGGCTTGCCAATCCAGGCTCCGTAACCATGGCTACCGAGCGCATCAAAGAACTGCTGCTTGGCGACCTGGAAGGACATGGCGGCCATCTTGGCTTGGGCGTAAGACGGGAGAGCCAGCAGGTCCTGGCGCCCGCACTGTTGGCATAACGACCGGAATTGACGGAAGATGTTGGACTTGGAGACCCGCGACACATCCAGTTTGGGGCTGGTGCTGCTATCTGGATGAGGGTGGATGAGGTCTGAGGGTCTGGTTCTAGTTGTGGTGCGGGGTGCGTACCCGTCCAGTTTGCCCTTGGTCCCATCCAGCACCTCCACAGTGATGTGGTCTGGCTGGCTCCAGTTCACGCTGGACTCCTTGGTCTTCCCTGTGTGACGCGTCGAGTCATACACACTCACCCTGCCCACctcggggtggttgagtgtGTAGGGAGCAGGTAGACTCTTGGAGAAGGCTTCGCCGTCTCTGGCCAATCGGCAGCAGACAGCACGTGTCAGGTGGCCATGGCTGTACAGGTAGCCCAGGGTGATTGAAGCCAGGTAGATAGGATGGAGGAAGTGGGAGAGCAGGGCTCCCTGCAGACCCAGGACGTTCCAGCGAAGGATCTTGTCGCTACAGCTCATGGTCCTCAGACGCTCGCCGTGCTGGATGCCGTCCCAGGTGGGCACGATGGTCGATGACTCTACCGGGATGGTGCCCTCACCATTCTCCACCTTGGTGCGCAGCTTGCCCTGCTTGGCGTTCTCAAACAGGGGCTGGTGGCCCTGGCCGTCCCCCGCGTCCTCACTGCACGACTTATCAAACAACGCCCCGTCTCCGCACGGAGCAGTACTGATATAGAGGTGGAAGGTGGTGTCAGGTTTGATCCGGAGCTTGTTCTCCTCAGCTGGCTCAAATATGCTGTCCTCTGATCCTTCACAGTGCTTCAGCAACTCAGCATATAGaaacCTGATAAACCCTCTCCTGGAGATGATTTCTGCGTGGCAGTCATTAACGGTGTCCCCTTTAAGACTCAGCTCCTCCCCTTTAACACAGCGATTTCCTGTTCCCAGACTGACCACGGTCCCCAGCCCTTCCCCCCTCTTCATGACGATGGTAGCGAGGATCTTCCTTCCCAGAAGACTGTGCTGTATGCGTGTGGTGAGGGCGTTGAAGCGCTGGTGACTCAACATGGCGATCTGGTCATGGATTGTCCCACCACTCAGTGGCAGCTCTGCAGGGGTTAGTTCCCCGGTGCGGGCAGCCTTCTCTGCCTCTCCAATCAGAACCCTCAGAGCTGCATCAGCTGCTTCCTGTTTCCCTTGCTTCTTATTGGAAGCACAGACAGGAGGGAACCAGCGACCCCCTAGTTTAGCCTGGTAGGTAAacTTGGGCTCGTGCGGTGGTCCTGACTGCCCGACCAGTCGTATCTCTGCAGCGAAGCCCCTGGCCCGGGCGTACTCCAGCAGACCTGACACAGCGTTGTTGTTTAGGTGGCTGATGAGGTCACCAACCCCCGCCTCGTGGGCAGAACGCAGCTCCTCCTCTGTCAGCGGGGGCAGGGAGGGGCAAGCGGGCATGAAGCCCCCTTCATCACCAGACAGACACAGGGGAAAC
>TU136377
ACAAAGCCGGTCTTTATAATCACTTAAAACTTGACAGAATTTCCATACATAATAAAACAAAATGCTTTCTGTCATCCACTTGATAAAACGTTTCAAAAAAATAGTCAATAGAAAATCAATTTTAGGCATGACTTACaaaatatatacataatatatacatatacatacacacacagagatatatacaTACCCTACACAAACATTGCTATTGCATATACATCTGTGTATTTATGTATTTGTATGTACATGATGTATATATTGCTTCACCCTTGAATGTATTTGATCAGACTGAactaaaacataaaaacaaacCAGTCTTTCTCCCTGTCCACATAAAACCTGCCGGCCACATTCTGGCCACGCTAGGAAGGACAAGAGTGCAAAGCCTTTCTTCTCTTTTTTTTATCACAACTACGAGTAATCACTTATCCTAACCTGAACTTTGACCCCCCCTAACATGAATCCTAAAATGAGAACAAGTAGCTGATTTACTTGTTCTCAGCAGTTCTCAACGTCACCGTTGTCCTTTCTGACGTGGCCCTCGAGTGGCAACACCAAAAACCTCAAGAACAATAGCGATACACACCACATAGGACACAACAATAACAGAATAATTATGATCTAGGCTAGTTAGTCATCAAATCTATGTTACAGTCGAGAGTTATGGGATGGACCAGGCTGTGACCTGTAGACGTAGCCATAGCATTAACAACAGTGTAAAGGGGTGGGTTACTAGGTCGGGGAGTAGCTAAACGTTACAAGgctggtttatatatatatataaagtgtgATCACTACTATCCATGCTCAGGCTGATAAGTACAGATTAAACTAGTCATGCGTGATTGAATGGCTGGCTGGCGAGTAGGACAGGGTCAGGTGTAGGGTGTCTGAACTAGAGAGACAGGGCTGTGTGCGTGAGGGCAGGGAGGGTTTGTCCTGTAGGTAAATGTGAGGATAGAGTGTCCTGGGGCTACTGTTACAGTGGAGCAGTAGTGCATGCTATGCAGCTCTGAATGTCACCACATCACAGTCATCATGCTTACTATCCCCctattctcccctctctttctatatTCTGTTGCTTTTGTGTAGCAGTAGcaaccccttctctctccatctctcttgctGCTGTCTGACCCTCACCCCTTGGGCTGGCCTGTtatccccttccctccctctcatctctccctctatgtacTATCGTTCCCTCCTCACCCAGGGTGATTGAAGCCAGGTAGATAGGATGGAGGAAGTGGGAGAGCAGGGCTCCCTGCAGACCCAGGACGTTCCAGCGAAGGATCTTGTCGCTACAGCTCATGGTCCTCAGACGCTCGCCGTGCTGGATGCCGTCCCAGGTGGGCACGATGGTCGATGACTCTACCGGGATGGTGCCCTCACCTACACATGGCACAGACACCATTGAGGCATACTTTTGACTCCAACGACAAAGG
>TU136376
ACAAAGCCGGTCTTTATAATCACTTAAAACTTGACAGAATTTCCATACATAATAAAACAAAATGCTTTCTGTCATCCACTTGATAAAACGTTTCAAAAAAATAGTCAATAGAAAATCAATTTTAGGCATGACTTACaaaatatatacataatatatacatatacatacacacacagagatatatacaTACCCTACACAAACATTGCTATTGCATATACATCTGTGTATTTATGTATTTGTATGTACATGATGTATATATTGCTTCACCCTTGAATGTATTTGATCAGACTGAactaaaacataaaaacaaacCAGTCTTTCTCCCTGTCCACATAAAACCTGCCGGCCACATTCTGGCCACGCTAGGAAGGACAAGAGTGCAAAGCCTTTCTTCTCTTTTTTTTATCACAACTACGAGTAATCACTTATCCTAACCTGAACTTTGACCCCCCCTAACATGAATCCTAAAATGAGAACAAGTAGCTGATTTACTTGTTCTCAGCAGTTCTCAACGTCACCGTTGTCCTTTCTGACGTGGCCCTCGAGTGGCAACACCAAAAACCTCAAGAACAATAGCGATACACACCACATAGGACACAACAATAACAGAATAATTATGATCTAGGCTAGTTAGTCATCAAATCTATGTTACAGTCGAGAGTTATGGGATGGACCAGGCTGTGACCTGTAGACGTAGCCATAGCATTAACAACAGTGTAAAGGGGTGGGTTACTAGGTCGGGGAGTAGCTAAACGTTACAAGgctggtttatatatatatataaagtgtgATCACTACTATCCATGCTCAGGCTGATAAGTACAGATTAAACTAGTCATGCGTGATTGAATGGCTGGCTGGCGAGTAGGACAGGGTCAGGTGTAGGGTGTCTGAACTAGAGAGACAGGGCTGTGTGCGTGAGGGCAGGGAGGGTTTGTCCTGTAGGTAAATGTGAGGATAGAGTGTCCTGGGGCTACTGTTACAGTGGAGCAGTAGTGCATGCTATGCAGCTCTGAATGTCACCACATCACAGTCATCATGCTTACTATCCCCctattctcccctctctttctatatTCTGTTGCTTTTGTGTAGCAGTAGcaaccccttctctctccatctctcttgctGCTGTCTGACCCTCACCCCTTGGGCTGGCCTGTtatccccttccctccctccatctcagtAACTCTGTCCTTTCCAATCTGTCTGACCTCTACCCCTTCTTTCAAGAAGATCCAGTACTCGCTGCTagctcctctcccccccccccccccccctgtcctccAGGCTCATGTCCTTCTAGCcaaccctcccttctccctcctttctACATGGCCTGTGTGTATGCACTACTACCCCACTGGCTGCTGTTATAGTCAGTGGTTGTGCTTCCATagctattgttgttgttgtatccCTGGTTGCTATTAGCAACACTTCCTGCCCCTTGGCCGTCCGAGGCTGCTGCTTCGTCAAAGCTCTTCTCCTCCAATGGCTTGCCAATCCAGGCTCCGTAACCATGGCTACCGAGCGCATCAAAGAACTGCTGCTTGGCGACCTGGAAGGACATGGCGGCCATCTTGGCTTGGGCGTAAGACGGGAGAGCCAGCAGGTCCTGGCGCCCGCACTGTTGGCATAACGACCGGAATTGACGGAAGATGTTGGACTTGGAGACCCGCGACACATCCAGTTTGGGGCTAGAGGGAAGACAAACAGGGTTTAGGAATACACAGAAGCTACTGCGCTGGGATtgaaacattttcaacatgtttttCATATGAATTAAATGCCACTACTCGATATAGAGTATAAATAGTGATTGCTATTCTACTGAAATGGGGCCCTGTGTAGCCCAGGTTAACCACCTGGTGCTGCTATCTGGATGAGGGTGGATGAGGTCTGAGGGTCTGGTTCTAGTTGTGGTGCGGGGTGCGTACCCGTCCAGTTTGCCCTTGGTCCCATCCAGCACCTCCACAGTGATGTGGTCTGGCTGGCTCCAGTTCACGCTGGACTCCTTGGTCTTCCCTGTGTGACGCGTCGAGTCATACACACTCACCCTGCCCACctcggggtggttgagtgtGTAGGGAGCAGGTAGACTCTTGGAGAAGGCTTCGCCGTCTCTGGCCAATCGGCAGCAGACAGCACGTGTCAGGTGGCCATGGCTGTACAGGTAGCCTGGAGGGACAAATataagagacaaggacagggaaaacaaaacagaagagagaggaaggggtgcgACAGATTGACatgtaaagaaagagggagagaaagagaatgacagaagagagtgtcagtgtaTTTCCGTGTTAACAAGGCTGATCACATCATAGAGTACTCTGACAAGGAGAGGTTAGTAAAGAGATGGATGTCTGAGGGGGTCAGTCAGGGACAGTCTGGGTGGATAGTTAGCTGGTCATGATTCCTACAGTATAAGGACAGGGAGTGTCTGGGTGGCTAGTTAGCTGGTCATGACTCCTACAGTATAAGGACAATGACTGTCTGGGTGGCTAGTTAGCTGGTCATGACTCCTACAGTATAAGGACAGAGTCAGCCAGGGACAGTCTGGGTGGCTAGTTAGCTGGTCATGACTCCTACAGTATAAGGACAGGGACTGTCTGGGTGGATAGTTAGCTGGTCATGATTCCTACAGTATAAGGACAGGGACTGTCTGGGTGGATAGTTAGCTGGTCATGATTCCTACAGTATAAGGACAGGGACTGCCTG

Function

symbol description
adar Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Predicted to be involved in RNA processing and adenosine to inosine editing. Predicted to act upstream of or within defense response to virus. Predicted to be active in cytoplasm and nucleolus. Is expressed in brain. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome; Human papillomavirus infectious disease; dyschromatosis symmetrica hereditaria; and liver cirrhosis. Orthologous to human ADAR (adenosine deaminase RNA specific).

NR:

description
double-stranded RNA-specific adenosine deaminase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136380 False 3092 lncRNA 0.46 10 17151988 17161387
TU136377 False 1454 lncRNA 0.44 2 17156287 17161387
TU136376 True 2736 lncRNA 0.43 3 17156776 17161387

Neighbor

gene id symbol gene type direction distance location
LOC110519673 LOC106605887 coding downstream 10420 17073218 ~ 17141568 (-)
LOC110534246 LOC106605885 coding downstream 30665 17094247 ~ 17121323 (-)
LOC110536202 LOC105024462 coding downstream 281622 16835619 ~ 16870366 (-)
LOC118937862 NA coding downstream 606609 16544642 ~ 16545379 (-)
LOC118937856 NA coding downstream 607767 16543484 ~ 16544221 (-)
LOC110520880 LOC106605923 coding upstream 216625 17378012 ~ 17382684 (-)
LOC118944171 NA coding upstream 219432 17380819 ~ 17380955 (-)
LOC118944170 NA coding upstream 219866 17381253 ~ 17381388 (-)
LOC110520799 ash1l coding upstream 294340 17455727 ~ 17484284 (-)
rnf115 LOC106591015 coding upstream 353697 17515084 ~ 17523082 (-)
G118435 NA non-coding downstream 2456 17148192 ~ 17149532 (-)
G118396 NA non-coding downstream 90065 17060832 ~ 17061923 (-)
G118395 NA non-coding downstream 92424 17058452 ~ 17059564 (-)
G118393 NA non-coding downstream 95437 17056323 ~ 17056551 (-)
G118392 NA non-coding downstream 96864 17051181 ~ 17055124 (-)
G118454 NA non-coding upstream 70154 17231541 ~ 17236747 (-)
G118455 LOC106562530 non-coding upstream 82127 17243514 ~ 17250649 (-)
G118461 NA non-coding upstream 103269 17264656 ~ 17289912 (-)
G118462 NA non-coding upstream 159527 17320914 ~ 17322386 (-)
G118490 NA non-coding upstream 161420 17322807 ~ 17323020 (-)
G118319 NA other downstream 153895 16916621 ~ 16998362 (-)
G118303 NA other downstream 217698 16933569 ~ 16934290 (-)
G118273 NA other downstream 323966 16827671 ~ 16828022 (-)
G118456 LOC100380853 other upstream 82737 17244124 ~ 17252276 (-)
G118494 NA other upstream 169728 17331115 ~ 17332028 (-)
LOC110536309 LOC106574682 other upstream 503943 17663193 ~ 17666667 (-)
G118606 NA other upstream 520635 17682022 ~ 17710023 (-)

Expression


Co-expression Network