G117772 (LOC100380853)


Basic Information

Item Value
gene id G117772
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17243409 ~ 17254914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135532
taattaatcccgcacaaggaaccaggcgggccggctgactaaataaagcctcactaattatacagaattcaaaacaggtgcactcaatgaacacataagggagggggaggaaataatcagtggcagctagtaggccggcgacgacgaccgccgagcgccacccgaacgggaaggggagccaccttcggtcggagtcgtgacagtaccccccccttgacgcgcggctcccgcagcgcgccgacaccggcctcgaggtcgacccggaggacgaggcgcagggcgctccggatggaggcgatggaaatccctcaacattgacggatccaaaatgtcccccaccggtacccagcacctctcctccggaccgtacccctcccagtccacgaggtactgcaggcccctcacccggcgtctcgagtccagaatggcccgtatcgtatacgccggggacccctcgatgtccagagggggaggagggacctccggcacctcaccgtcctgtaggggaccagctaccaccggcctgaggagagacacatgaaacgaggggttaatacgataataggaagggagttgtaatcgataacacacctcgtttattctcctcaggactttgaaaggccctacacactgcggcccaagcttccggcagggcaagcggagggacaggtttcgggtcgagagccagaccctgtcccccggtacaaacacgggggcctcactgcggtggcggtcagcactccttttCTGCCGTCCACTAGCTTGTTGAAGGGATTcccggacggccctccaggtctctttggagcgctgcacccattcctccaccgcaggagcctcggtctggctcggatgccacggtgccaggaccggctggtaccccaacacacactgaaaaggggacacattagtagaggagtggcgtagtgagttctgggccatttcggcccaggggatgtacctcgcccactcccctggccggtcctggcagtacgaccgcagaaacctacccacctcctggtttactctctccacctgcccattactttcggggtgataaccggaggtcaggctgaccgagacccccagacgctccatgaacgccctccatactcgggacgtgaactgggggccccgatcagaaacgatgtcctccggcaccccgtagtgccggaagacgtgggtgaataatgcctccgcagtctgtagggctgtagggataccgggcaacgggaggagacggcaggacttagagaaccgatccacaatcaccagaaccgtggtgttcccctgagacgggggaagatcggtcaggaagtctacggatagatgtgaccatggccgttgtggaacggggaggggttgtaacttccctctaggaaggtgcctaggagccttactctgggcgcatactgaacaggaggagacataaaccttaacgtccctagccaaggtaggccaccaatacctcccccgaAGGCTTCCTATTGTCCTcctcaccccagggtgacccgaggagggtaggacgtgagcccaccgaatcagttggtcccgaacaccaagcggcacgtacttctgccccgccggacactgaggaggcgcgggttcagcccgtaacgcccgctcgatgtccgagtccacctcccataccaccggtgctatCAGCTttgaggcgggaaggatgggagtaggttcggtggacctatcctctgtgtcgtaaaggcgggacagtgcatccgctttcacgttctgggagcccggtctatacgATAAAGTGAACCGGAATCGGGTAAAAaatatggcccaccttgcctgacgcgggttcagtctcctagctgcccgaatatactccagattttggtggtcggtccagatgagaaaggggtgcttagccccctcaagccagtgtctccacaccttcagagccctgaccaccgctaacaactcccggtcacccacatcatagttacgctccgctgggctgagcttcctcgagaagaaagcgcaggggcggagttttggtggcgtacccgagcgctgtgatagcacggcacccaccccagcctcggacgcatccacctccactatgaatgctagagaggggtccggatgggccaacacgggtgcatccgtgaacagcgccttcaacttgttgaaagctccgtccgcctctgctgaccaccgcaaccgcaccggaccccccttcagcagtgaggtaattggagccgctacctggccaaaaccccggataaacctccggtagtagttggcaaaacccaaaaaccgctgcacctcttttaccgtggtcggagtcggccaattacgcacggccttactgcggtcaccctccatctccacccccgaggtggaaatgcgataacccagaaaggagacggctcgtttggagaacacacacttctcagccttgacgtataggtcatgctccagcagtctaccaagcaccctgcgtaccagagacacatgcgcggcgtgagtggctgagtagatcagaatatcatcgatataaacaactactccctgcctgtgcaggtccctgagaatatcgtctacaaaggattgaaaaacggctggagcattctttaacccatatggcatgacgcagtactcatagtggcccgatgtggtactaaatgcggttttccactcgtctcccttccgaatacgcaccaggctatacgcgctcctgagatccaattttgtgaagaactgcgctccctgaaatgattccactgccgtagcaatgagaggtagtgggtagctGAATCCCACCgtgatggcatttagacctctataatcaatacacggacgcaaacctccctcctttttcctcacaaaaaagaaactcgaggagacgggtgagatggaggaccgaatgtacccctgtcccagagactccgtgatatatgtctccatagccaacgtctcctcctgggataatgggtacacgtgactcttgggaagcgcagcgtctacctggagatctatcgcacaatcccttcccggtcgatgtggtggtaatttagtcgccttctttttactgaaagcgattgccaaatcggcatactcggggggaatgcacaccgtgggaccctggtctggactctccaccgacgtggcaccgatggaaactcccagacaccttccagaacactcctctgaccacccctggagaaccccctgtctccacgaaattttaggattgtgccaggccagccagggaatccctagcaccactggaaacgcaggcgcaTCAATAATGTAgagactgatacgctccctatgattcccctgcgttaccatgtccagtggaaccgtggtctccctgaccacccctgaccctaatggccggctatctagggagtgcacgggaaagggagaatctatcggcacaagcggaacacctaatttaatagcgagtccgcgatccataaagttcccagctgcgcctgaatcgactagcgccctatgctgggaagaggggaaaaatttaaggaaaaaaatcaagacaaacatgtgaccaacagggggttctgggtgagtttggtgctgactcacctggggtgatcgagaaatgttccgcctgccatctcgactcccagacggacccccccagcaccgatcggccgtgtgtcctctccgaccacagctggtgcagagggagcctcctcctccggtacccctcggcacagtccctcccaactccatcggaacgGGAGTGACGgtgctgggtggtggaacacacaggaccctctccgaacgcccgcgggcagccagcagattgtccagtcggatggacatgtcaattagctcatccagggaaagagcggtgtcccgacacgctagctccctgcggacgtcctcccggagactacaccggtaatggtcgataagagccctgtcgttccacccagatcctgctgccaaggtccggaactccaacgcgtaatcctgggcgctcctcttctcctgccggaGATGGAATAGTCGCTCTCCCGCTGCTCGGCCATCTGGAGGGTGGTCAAACACTGCGCGGAAGCggcgggaaaactctgggtagtgctccttcgctgagtctgggccattccagactgcgttcgcccactccagagcacgacccgtgagacaggagatgaggacactcaccctctccgctcccgagggagtgggtctgacggtGGCTAGGTACAGTTCCAGCtggagtaagaacccctggcaccccgccgccgctccatcatagacCCTCGGGAGCGtaagacggagggtgctggagtcgggagatggggagtcctgAGGGGGGggagccgaaggtggagagaggagaccacttctctcccatcggtccattctctccatcacttgatccatagccgttccgatccgatggagaacggtggtatgatgtagaaccctttcctccatcgatgggaggggattggctgttgctcctgctgactccattcctcagggtgcgggattctgtaacgttctgagtgtagtgggtgagaagtcaggcgcaggaagcagagagttcaggggagtgctattttaatgcaccacaacggtgaacataagccaaccccacgaaaacacagggcgtaaacaaaacaaacgccccaaacagggggacttaaacggtccagaaaagacccacgaaatgggaaagcacgtaactcacagacgtgcacacaagtttacacaacacagaaggtcacaataattcatcccgcacaaggaaccaggcgggccggctgactaaataaagcctcactaattatacagaattcaaaacaggtgcactcaatgaacacataagggagggg

Function

NR:

description
uncharacterized protein lrfn4b isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135532 True 4838 lncRNA 0.39 2 17243409 17254914

Neighbor

gene id symbol gene type direction distance location
LOC110534250 adar coding upstream 82011 17141664 ~ 17161398 (+)
LOC110536287 LOC106605892 coding upstream 188220 17026878 ~ 17055189 (+)
LOC110534239 LOC106594151 coding upstream 238814 17002350 ~ 17004595 (+)
LOC110536241 LOC106606012 coding upstream 242046 16998821 ~ 17001363 (+)
LOC110536275 s10i coding upstream 245053 16995630 ~ 16998361 (+)
LOC110520897 NA coding downstream 56214 17311128 ~ 17315827 (+)
LOC110520882 rab13 coding downstream 128149 17383063 ~ 17394790 (+)
LOC110520798 fam189b coding downstream 140429 17395343 ~ 17421816 (+)
fdps LOC106605924 coding downstream 167142 17422056 ~ 17425996 (+)
rusc1 LOC106605889 coding downstream 171518 17426432 ~ 17452486 (+)
G117750 NA non-coding upstream 78938 17164185 ~ 17164471 (+)
G117711 NA non-coding upstream 171183 17068585 ~ 17072226 (+)
G117708 NA non-coding upstream 178032 17065173 ~ 17065377 (+)
G117701 NA non-coding upstream 200499 17041521 ~ 17042910 (+)
G117780 NA non-coding downstream 9708 17264622 ~ 17286752 (+)
G117781 NA non-coding downstream 12351 17267265 ~ 17267624 (+)
G117787 NA non-coding downstream 26608 17281522 ~ 17289802 (+)
G117793 NA non-coding downstream 43350 17298264 ~ 17299479 (+)
G117807 NA non-coding downstream 63715 17318629 ~ 17319699 (+)
G117714 LOC106605886 other upstream 169708 17073201 ~ 17073701 (+)
G117704 NA other upstream 192570 17050132 ~ 17050839 (+)
G117048 NA other upstream 1057625 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1791721 15448845 ~ 15451856 (+)
G117735 NA other downstream 200851 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1202444 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1378925 18633839 ~ 18636041 (+)
G119160 NA other downstream 1415599 18670513 ~ 18672320 (+)

Expression


Co-expression Network