XLOC_002097 (npm1a)


Basic Information

Item Value
gene id XLOC_002097
gene name npm1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22034477 ~ 22045119 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004081
TCTGTCCCTGGAGCTCAGTGATTGGCTGGACCGGAGGACCGTCACAGAAGTGGGCGTGATTTACTCGATGTGGGTCAGTGTGCTCTTCCTGCACTCGTGTTCGCTGACTGCACATTTCAGCCGACGTACAGTCACACACAGCCTGCAGACATGGATCTCGAACAGATGGGTCCCCAAACCTTCCTGTACGGTTGTGAACTGAAAGCAGGCAAGGATATCACGTTTAATCCAGAGGATGATGATTATGATCATCAATTATCGGTTAGAATGGCCTGTGTGGATCCCTCGACAAAAGATGAATTGAATGTTGTGGAGATTGAAGGACAAGATTCAGAGGGTCAGAAGGTCAAGGCAGTTCTAGCAACACTCAAGCCTTCAACTCTCCCAAGTGTATGTTTGGGTGGGTTTGAGATCACGCCACCGGTTGTTTTCCGTCTGCGCACTGGTTCTGGTCCAGTTCACATTAGTGGACAGCATCTTGTTATCATGGGAGGAGATCAGTCTtttgatgaagaggaggaggaggaggaagaagaggaaacCGTGATGACATCCAAGAAGAGGCCAGCGCTGTCAACTCCAAAGCCTTCAAAAAAAATGAAGATGGATGAGGAAGATGACGATGATGATGATGAGgacgatgatgatgaagatgacgaTGAGgaagatgaaagtgaagaggagTCACCTGTGAAAGAAAAGAAAGCACCAGCGAAACCAAAGACCCCTACACAGAATGGAAAAGGACCCAAACCCAGTACACCTGCTAAACAAACTCCACAAAAGGGCAAGAAGGAACAGACACCCAAAACGCCACAAACACCACGGACTTTAGCCGATATCAAGTCCAAGATGATGGAGAGTGTAGCAAAGGGTGTGTCATTACCAAAAGTACAGCTGAAGTTTGAGAACTATGTGAATAACTGCTTCAAAGGCACAGATCCAAAGGTTGTTGAGGAGCTCTGGAAGTGGAGACAGactgtcaaataaatgaactaaaacgccttttattttgcttaaattaagCCCCTTTCCCACACGATTTTACTTTTGTTACCTgcaattttatgtttgtttgtcccCATACCTTTCAGTTTTTATGTTAAATCCGTGCCATTCCTCGAAATGACTTGAAACAACTTGACCTTGTTCAGTCTGCCTTGTCCTCACCCTCGGTCATGTCATTTGAGTGTGGGGTTAACTTGGCTGCAGTATTGCTCAATTATGAAGCTCTGATTTATATAAAGATATGTTGGTGGTGCCCGTCCATGTTTTCTTTAAACTGACATGGAAATGTCTGCATAGCTATCTGGTTAGATCTGTGATGCGATAATGCAATGTATGAATAGTGGGTTTCAGAATGGCCTCAATGTTTAATTCTGGTATTTCAGCAGCAGTtgatattattttgtaattttcatTCCCTGGAAAGAGTTAAATGCCATTGTATGTTCAGGATTGAATGGTCTTCAGATGTCATCAATGTATTGTAATGTCACAGACTTTGCAGCCCTGTCTCAACAGAATCAGGACTCAGGACATTTCAGATGTGGTTCTGTTTTTTGACTTTCTGAaatgtttaaatgcaaataaaggaTATATTTCACAACTGAAA
>TCONS_00004082
CGTACAGTCACACACAGCCTGCAGACATGGATCTCGAACAGATGGGTCCCCAAACCTTCCTGTACGGTTGTGAACTGAAAGCAGGCAAGGATATCACGTTTAATCCAGAGGATGATGATTATGATCATCAATTATCGGTTAGAATGGCCTGTGTGGATCCCTCGACAAAAGATGAATTGAATGTTGTGGAGATTGAAGGACAAGATTCAGAGGGTCAGAAGGTCAAGGCAGTTCTAGCAACACTCAAGCCTTCAACTCTCCCAAGTGTATGTTTGGGTGGGTTTGAGATCACGCCACCGGTTGTTTTCCGTCTGCGCACTGGTTCTGGTCCAGTTCACATTAGTGGACAGCATCTTGTTATCATGGGAGGAGATCAGTCTtttgatgaagaggaggaggaggaggaagaagaggaaacCGTGATGACATCCAAGAAGAGGCCAGCGCTGTCAACTCCAAAGCCTTCAAAAAAAATGAAGATGGATGAGGAAGATGACGATGATGATGATGAGgacgatgatgatgaagatgacgaTGAGgaagatgaaagtgaagaggagTCACCTGTGAAAGAAAAGAAAGCACCAGCGAAACCAAAGACCCCTACACAGAATGGAAAAGGACCCAAACCCAGTACACCTGCTAAACAAGTTTGTATATCTCTTTTTCTTCTTGAAAGTAGAGGTTCATGTTTGTAGTCTGCCTAGCCTTagtgttttaaaatgatgttttatgGAAACAGACTCCACAAAAGGGCAAGAAGGAACAGACACCCAAAACGCCACAAACACCACGGACTTTAGCCGATATCAAGTCCAAGATGATGGAGAGTGTAGCA
>TCONS_00004083
CGTACAGTCACACACAGCCTGCAGACATGGATCTCGAACAGATGGGTCCCCAAACCTTCCTGTACGGTTGTGAACTGAAAGCAGGCAAGGATATCACGCCACCGGTTGTTTTCCGTCTGCGCACTGGTTCTGGTCCAGTTCACATTAGTGGACAGCATCTTGTTATCATGGGAGGAGATCAGTCTtttgatgaagaggaggaggaggaggaagaagaggaaacCGTGATGACATCCAAGAAGAGGCCAGCGCTGTCAACTCCAAAGCCTTCAAAAAAAATGAAGATGGATGAGGAAGATGACGATGATGATGATGAGgacgatgatgatgaagatgacgaTGAGgaagatgaaagtgaagaggagTCACCTGTGAAAGAAAAGAAAGCACCAGCGAAACCAAAGACCCCTACACAGAATGGAAAAGGACCCAAACCCAGTACACCTGCTAAACAAACTCCACAAAAGGGCAAGAAGGAACAGACACCCAAAACGCCACAAACACCACGGACTTTAGCCGATATCAAGTCCAAGATGATGGAGAGTGTAGCAAAGGGTGTGTCATTACCAAAAGTACAGCTGAAGTTTGAGAACTATGTGAATAACTGCTTCAAAGGCACAGATCCAAAGGTTGTTGAGGAGCTCTGGAAGTGGAGACAGactgtcaaataaatgaactaaaacgccttttattttgcttaaattaagCCCCTTTCCCACACGATTTTACTTTTGTTACCTgcaattttatgtttgtttgtcccCATACCTTTCAGTTTTTATGTTAAATCCGTGCCATTCCTCGAAATG
>TCONS_00005883
CGTACAGTCACACACAGCCTGCAGACATGGATCTCGAACAGATGGGTCCCCAAACCTTCCTGTACGGTTGTGAACTGAAAGCAGGCAAGGATATCACGTTTAATCCAGAGGATGATGATTATGATCATCAATTATCGGTTAGAATGGCCTGTGTGGATCCCTCGACAAAAGATGAATTGAATGTTGTGGAGATTGAAGGACAAGATTCAGAGGGTCAGAAGGTCAAGGCAGTTCTAGCAACACTCAAGCCTTCAACTCTCCCAAGTGTATGTTTGGGTGGGTTTGAGATCACGCCACCGGTTGTTTTCCGTCTGCGCACTGGTTCTGGTCCAGTTCACATTAGTGGACAGCATCTTGTTATCATGGGAGGAGATCAGTCTtttgatgaagaggaggaggaggaggaagaagaggaaacCGTGATGACATCCAAGAAGAGGCCAGCGCTGTCAACTCCAAAGCCTTCAAAAAAAATGAAGATGGATGAGGAAGATGACGATGATGATGATGAGgacgatgatgatgaagatgacgaTGAGgaagatgaaagtgaagaggagTCACCTGTGAAAGAAAAGAAAGCACCAGCGAAACCAAAGACCCCTACACAGAATGGAAAAGGACCCAAACCCAGTACACCTGCTAAACAAGTTTGTATATCTCTTTTTCTTCTTGAAAGTAGAGGTTCATGTTTGTAGTCTGCCTAGCCTTagtgttttaaaatgatgttttatgGAAACAGACTCCACAAAAGGGCAAGAAGGAACAGACACCCAAAACGCCACAAACACCACGGACTTTAGCCGATATCAAGTCCAAGATGATGGAGAGTGTAGCAAAGGTTGGTTTTTCTGTGCATCCCCTCAGCAAGTGAAATTACAGCGAGTTAACAAAAACAACACTTAAGTTCTTTATTTGCTTTTTTGTGCAGGGTGTGTCATTACCAAAAGTACAGCTGAAGTTTGAGAACTATGTGAATAACTGCTTCAAAGGCACAGATCCAAAGGTTGTTGAGGAGCTCTGGAAGTGGAGACAGactgtcaaataaatgaactaaaacgccttttattttgcttaaattaagCCCCTTTCCCACACGATTTTACTTTTGTTACCTgcaattttatgtttgtttgtcccCATACCTTTCAGTTTTTATGTTAAATCCGTGCCATTCCTCGAAATGACTTGAAACAACTTGACCTTGTTCAGTCTGCCTTGTCCTCACCCTCGGTCATGTCATTTGAGTGTGGGGTTAACTTGGCTGCAGTATTGCTCAATTATGAAGCTCTGATTTATATAAAGATATGTT
>TCONS_00004084
CATGGATCTCGAACAGATGGGTCCCCAAACCTTCCTGTACGGTTGTGAACTGAAAGCAGGCAAGGATATCACGTTTAATCCAGAGGATGATGATTATGATCATCAATTATCGGTTAGAATGGCCTGTGTGGATCCCTCGACAAAAGATGAATTGAATGTTGTGGAGATTGAAGGACAAGATTCAGAGGGTCAGAAGGTCAAGGCAGTTCTAGCAACACTCAAGCCTTCAACTCTCCCAAGTGTATGTTTGGGTGGGTTTGAGATCACGCCACCGGTTGTTTTCCGTCTGCGCACTGGTTCTGGTCCAGTTCACATTAGTGGACAGCATCTTGTTATCATGGGAGGAGATCAGTCTtttgatgaagaggaggaggaggaggaagaagaggaaacCGTGATGACATCCAAGAAGAGGCCAGCGCTGTCAACTCCAAAGCCTTCAAAAAAAATGAAGATGGATGAGGAAGATGACGATGATGAG
>TCONS_00004085
ATGGATCTCGAACAGATGGGTCCCCAAACCTTCCTGTACGGTTGTGAACTGAAAGCAGGCAAGGATATCACGTTTAATCCAGAGGATGATGATTATGATCATCAATTATCGGTTAGAATGGCCTGTGTGGATCCCTCGACAAAAGATGAATTGAATGTTGTGGAGATTGAAGGACAAGATTCAGAGGGTCAGAAGGTCAAGGCAGTTCTAGCAACACTCAAGCCTTCAACTCTCCCAAGTGTATGTTTGGGTGGGTTTGAGATCACGCCACCGGTTGTTTTCCGTCTGCGCACTGGTTCTGGTCCAGTTCACATTAGTGGACAGCATCTTGTTATCATGGGAGGAGATCAGTCTtttgatgaagaggaggaggaggaggaagaagaggaaacCGTGATGACATCCAAGAAGAGGCCAGCGCTGTCAACTCCAAAGCCTTCAAAAAAAATGAAGATGGATGAGGAAGATGACGATGATGAaaacagTGATGAGgacgatgatgatgaagatgacgaTGAGgaagatgaaagtgaagaggagTCACCTGTGAAAGAAAAGAAAGCACCAGCGAAACCAAAGACCCCTACACAGAATGGAAAAGGACCCAAACCCAGTACACCTGCTAAACAAACTCCACAAAAGGGCAAGAAGGAACAGACACCCAAAACGCCACAAACACCACGGACTTTAGCCGATATCAAGTCCAAGATGATGGAGAGTGTAGCAAAGGGTGTGTCATTACCAAAAGTACAGCTGAAGTTTGAGAACTATGTGAATAACTGCTTCAAAGGCACAGATCCAAAGGTTGTTGAGGAGCTCTGGAAGTGGAGACAGactgtcaaataa
>TCONS_00004086
AACGCATGTAACCATTTCTATTGCTTGCCTGCAATGTAAACTTATTTTCTGTATGTATTTTTCACGTTTTTTAGAtgctctttctttttttataaatatactaAGTTTTTATCGTAAGGTTGTGAACTGAAAGCAGGCAAGGATATCACGTTTAATCCAGAGGATGATGATTATGATCATCAATTATCGGTTAGAATGGCCTGTGTGGATCCCTCGACAAAAGATGAATTGAATGTTGTGGAGATTGAAGGACAAGATTCAGAGGGTCAGAAGGTCAAGGCAGTTCTAGCAACACTCAAGCCTTCAACTCTCCCAAGTGTATGTTTGGGTGGGTTTGAGATCACGCCACCGGTTGTTTTCCGTCTGCGCACTGGTTCTGGTCCAGTTCACATTAGTGGACAGCATCTTGTTATCATGGGAGGAGATCAGTCTtttgatgaagaggaggaggaggaggaagaagaggaaacCGTGATGACATCCAAGAAGAGGCCAGCGCTGTCAACTCCAAAGCCTTCA
>TCONS_00004087
GAACAGACACCCAAAACGCCACAAACACCACGGACTTTAGCCGATATCAAGTCCAAGATGATGGAGAGTGTAGCAAAGGTTGGTTTTTCTGTGCATCCCCTCAGCAAGTGAAATTACAGCGAGTTAACAAAAACAACACTTAAGTTCTTTATTTGCTTTTTTGTGCAGGGTGTGTCATTACCAAAAGTACAGCTGAAGTTTGAGAACTATGTGAATAACTGCTTCAAAGGCACAGATCCAAAGGTTGTTGAGGAGCTCTGGAAGTGGAGACAGactgtcaaataaatgaactaaaacgccttttattttgcttaaattaagCCCCTTTCCCACACGATTTTACTTTTGTTACCTgcaattttatgtttgtttgtcccCATACCTTTCAGTTTTTATGTTAAATCCGTGCCATTCCTCGAAATGACTTGAAACAACTTGACCTTGTTCAGTCTGCCTTGTCCTCACCCTCGGTCATGTCATTTGAGTGTGGGGTTAACTTGGCTGCAGTATTGCTCAATTATGAAGCTCTGATTTATATAAAGATATGTT

Function

symbol description
npm1a Predicted to enable RNA binding activity; chromatin binding activity; and histone binding activity. Acts upstream of or within hemopoiesis and regulation of apoptotic process. Located in nucleolus. Is expressed in several structures, including digestive system; fin bud; hematopoietic cell; nervous system; and neural tube. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human NPM1 (nucleophosmin 1).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0042981 regulation of apoptotic process biological_process
GO:0006338 chromatin remodeling biological_process
GO:0000055 ribosomal large subunit export from nucleus biological_process
GO:0000056 ribosomal small subunit export from nucleus biological_process
GO:0006407 rRNA export from nucleus biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0010824 regulation of centrosome duplication biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005813 centrosome cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042393 histone binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021028-1 Predicted to enable RNA binding activity; chromatin binding activity; and histone binding activity. Acts upstream of or within hemopoiesis and regulation of apoptotic process. Located in nucleolus. Is expressed in several structures, including digestive system; fin bud; hematopoietic cell; nervous system; and neural tube. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human NPM1 (nucleophosmin 1).

Ensembl:

ensembl_id ENSDARG00000014329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004081 False 1615 mRNA 0.43 11 22034477 22045119
TCONS_00004082 False 838 lncRNA 0.45 8 22034601 22041604
TCONS_00004083 False 809 mRNA 0.45 10 22034601 22044632
TCONS_00005883 False 1312 lncRNA 0.43 9 22034601 22044758
TCONS_00004084 False 481 mRNA 0.46 6 22034626 22036367
TCONS_00004085 False 846 mRNA 0.45 12 22034627 22044494
TCONS_00004086 False 519 processed_transcript 0.42 5 22035161 22036247
TCONS_00004087 True 549 lncRNA 0.40 2 22041530 22044758

Neighbor

gene id symbol gene type direction distance location
XLOC_002096 kcnip1b coding upstream 2556 22003750 ~ 22031921 (+)
XLOC_002095 BX005027.1 coding upstream 53812 21980547 ~ 21980665 (+)
XLOC_002094 NA coding upstream 85069 21936278 ~ 21949408 (+)
XLOC_002093 NA coding upstream 89133 21917877 ~ 21945344 (+)
XLOC_002092 NA coding upstream 90392 21914635 ~ 21944085 (+)
XLOC_002098 NA coding downstream 89414 22134533 ~ 22139340 (+)
XLOC_002099 NA coding downstream 179084 22224203 ~ 22263265 (+)
XLOC_002100 NA coding downstream 208225 22253344 ~ 22273862 (+)
XLOC_002101 NA coding downstream 230794 22275913 ~ 22279448 (+)
XLOC_002102 NA coding downstream 328182 22373301 ~ 22377028 (+)
XLOC_002091 NA non-coding upstream 128100 21906152 ~ 21906377 (+)

Expression


Co-expression Network