G117816


Basic Information

Item Value
gene id G117816
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17335857 ~ 17336202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135582
ctttacagagcctttaggtgagtccctaatgtagacagtagtgtagtctgtcagatctttacagagcctttaggtgtgtccctaatgtagacagtagtgtagtctgtcagatctaatgtagacagtagtgtagtctgtcagatctttacagagcctttatgtgtgtccctaatgtagacagtagtgtagtctgtcaggtctttacagagcctttaggtgtgtccctaatgtagacagtagtgtagtctgtcagatctttacagagcctttaggtgagtccctaatgtagacagtagtgtagtctgtcagatctttacagagcctttaggtgagtccctaatgtaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135582 True 346 lncRNA 0.50 1 17335857 17336202

Neighbor

gene id symbol gene type direction distance location
LOC100135972 LOC100135972 coding upstream 13438 17169568 ~ 17322419 (+)
LOC110520897 NA coding upstream 20030 17311128 ~ 17315827 (+)
LOC110534250 adar coding upstream 174459 17141664 ~ 17161398 (+)
LOC110536287 LOC106605892 coding upstream 280668 17026878 ~ 17055189 (+)
LOC110534239 LOC106594151 coding upstream 331262 17002350 ~ 17004595 (+)
LOC110520882 rab13 coding downstream 46861 17383063 ~ 17394790 (+)
LOC110520798 fam189b coding downstream 59141 17395343 ~ 17421816 (+)
fdps LOC106605924 coding downstream 85854 17422056 ~ 17425996 (+)
rusc1 LOC106605889 coding downstream 90230 17426432 ~ 17452486 (+)
dap3 LOC106605893 coding downstream 148623 17484825 ~ 17495968 (+)
G117813 NA non-coding upstream 1832 17333398 ~ 17334025 (+)
G117811 NA non-coding upstream 8680 17326947 ~ 17327177 (+)
G117809 NA non-coding upstream 11663 17323963 ~ 17324194 (+)
G117807 NA non-coding upstream 16158 17318629 ~ 17319699 (+)
G117793 NA non-coding upstream 36378 17298264 ~ 17299479 (+)
G117817 NA non-coding downstream 3374 17339576 ~ 17340310 (+)
G117818 NA non-coding downstream 17905 17354107 ~ 17355366 (+)
G117728 NA non-coding downstream 41810 17378012 ~ 17382571 (+)
G117839 NA non-coding downstream 70001 17406203 ~ 17407798 (+)
G117714 LOC106605886 other upstream 262156 17073201 ~ 17073701 (+)
G117704 NA other upstream 285018 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 337496 16995630 ~ 16998361 (+)
G117048 NA other upstream 1150073 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1884169 15448845 ~ 15451856 (+)
G117735 NA other downstream 119563 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1121156 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1297637 18633839 ~ 18636041 (+)
G119160 NA other downstream 1334311 18670513 ~ 18672320 (+)

Expression


Co-expression Network