G117728


Basic Information

Item Value
gene id G117728
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17378012 ~ 17382571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135485
TTCTTTAAACGAAAAAAACGAAACTTTATTAAGAAGTGAGAGACCGGTGGAGTGGTGTTACAGTGATGTCATCATGCCAGGGGACGTTCTCTCTCTACATACACAAAGCAGAGCTCAACACCATCTTTCCTCTTCAGTTTCATCTCTACTTTTCCTCTCGCGTTGTCACTTCCTGAGCAGGGTCACTGTGGGGTCAATCCCGTCTCTCCTCCCTTGGGTCTCTCGGTCCAACAAGCTCCAATGCTGAGTCTAGTGTTGTTTCCTCCTAAATGAGCAACCTTCTGTGAGGCGTGCTTTACCCCCTGTAGGTTGACACAGGACTGTGGAGCATCCGACACACAGGACGACCGTCTGGGCATGACTGAACACTGTCGTGATCTTATAGCATCCTGGACATTTGACGTCCATAAAATACGAGTTAGGGCTCTGTACAAGACGCTTCTTCTTGtgactcctcttctcctcctctgagGTTGGGTGTAACAGGTCCTTTGCGAGTGGCATGTTGGCGAGTTTGTAGCCGTT
>TU135486
TTCTTTAAACGAAAAAAACGAAACTTTATTAAGAAGTGAGAGACCGGTGGAGTGGTGTTACAGTGATGTCATCATGCCAGGGGACGTTCTCTCTCTACATACACAAAGCAGAGCTCAACACCATCTTTCCTCTTCAGTTTCATCTCTACTTTTCCTCTCGCGTTGTCACTTCCTGAGCAGGGTCACTGTGGGGTCAATCCCGTCTCTCCTCCCTTGGGTCTCTCGGTCCAACAAGCTCCAATGCTGAGTCTAGTGTTGTTTCCTCCTAAATGAGCAACCTGGGTTGACACAGGACTGTGGAGCATCCGACACACAGGACGACCGTCTGGGCATGACTGAACACTGTCGTGATCTTATAGCATCCTGTAGAGAGAACAGTTCAGACACAAATTAACATTCACCTCAATGTCCTGAACGAGACCTACTCGTGTTTTC
>TU135487
TTCTTTAAACGAAAAAAACGAAACTTTATTAAGAAGTGAGAGACCGGTGGAGTGGTGTTACAGTGATGTCATCATGCCAGGGGACGTTCTCTCTCTACATACACAAAGCAGAGCTCAACACCATCTTTCCTCTTCAGTTTCATCTCTACTTTTCCTCTCGCGTTGTCACTTCCTGAGCAGGGTCACTGTGGGGTCAATCCCGTCTCTCCTCCCTTGGGTCTCTCGGTCCAACAAGCTCCAATGCTGAGTCTAGTGTTGTTTCCTCCTAAATGAGCACCTTCTGTGAGGCGTGCTTTACCCCCTGTAGGTTGACACAGGACTGTGGAGCATCCGACACACAGGACGACCGTCTGGGCATGACTGAACACTGTCGTGATCTTATAGCATCCTGTAGAGAGAACAGTTCAGACACAAATTAACATTCACCTCAATGTCCTGAACGAGACCTACTCGTGTTTTC
>TU135488
TTCTTTAAACGAAAAAAACGAAACTTTATTAAGAAGTGAGAGACCGGTGGAGTGGTGTTACAGTGATGTCATCATGCCAGGGGACGTTCTCTCTCTACATACACAAAGCAGAGCTCAACACCATCTTTCCTCTTCAGTTTCATCTCTACTTTTCCTCTCGCGTTGTCACTTCCTGAGCAGGGTCACTGTGGGGTCAATCCCGTCTCTCCTCCCTTGGGTCTCTCGGTCCAACAAGCTCCAATGCTGAGTCTAGTGTTGTTTCCTCCTAAATGAGCATCCTCCTGTGTCTGCTTCATCAGTCCAGGGTGCTGCGGTGAATGTCAAGACTCCACGATGAGGCACATCGATCTACAGGTTGAAAatggtgagattgtagactctaaattgatagtgcagtttgtttaggtGATCTCACAGCTAACTAGCAACTTCTTATGCTGATATTGACTTGTGTTGTGTTTAGGTATGTTTGCGAGCCA
>TU135484
agggatattttatttcagctcatgaaacatgggaccaacattttgcATTTATATAGCTGGCTCAGAgctcgttttgatatttcaacctgcgtgtcttGGATTGCGTCTGGTGTGGACATACAAAACCAACATGGTCCAGTCAGCATGTTATGATATGGACAGACATTCACTAGAAACTCATTGCATGCCAATATTGTCAATCATTAATACTAGGACAATATTGACCAACTGACTGGTGATCCAGGAAACGGTATATGGCACCGCTGTCACTAAGCAAACAATACAGGGAATAGGTTCCACCTGGCAACATCATATAGTGAGAAATATGTTTAAACACCAAATCGCAATACACATTTTTTTCAGCACTTTGAATAAAGATCCACCCATTGTTAATGTTGTGTTTCTGTGCATCTCTGGGTGATGTCCTATCAATTCCCCCTGGGTaatttcatgtgtatctgagccATTGCCGTTCAAGCAGCCAGAAATTCAGGCCGGTATGATGTAGCACTGATAGCCTCTCACTACcctggaagttaataggaatatGACTTTTAGATTGCAAAACCGTCCGTCATACATGTCAGATTTGAATACGGGCCGATGTCATAATACGAGAGGTTGTCTTCTCTCCAATGAGCCATTTATCATATTTTTGTGATTTTCTCACAACGAATGTGTCATTTAACAGGGGGTCTAACACATTCCTCCTGTGTCTGCTTCATCAGTCCAGGGTGCTGCGGTGAATGTCAAGACTCCACGATGAGGCACATCGATCTACAGGTTGAAAatggtgagattgtagactctaaattgatagtgcagtttgtttaggtGATCTCACAGCTAACTAGCAACTTCTTATGCTGATATTGACTTGTGTTGTGTTTAGGTATGTTTGCGAGCCAGTTACCTTCCTAGCTAGCCTATAGAGCATTGTGGATTAGGAAGTtgacttgagctgcaacagatttccacgTTGCTACCAAACTTATAACAAAATGAAACATTGTCCACAGTGTTATGTAGCACTGTAAATGATAGATGGACATTCCACTCATTCCTAAGTATTGATATAATATTGAGGTCCCTGGCGATTTCTAGCCCTACAAACACTGCCAAACTGAGCTGTGGTGAACACAAACCAAGCCAGCTGAGCAGGTAAAGGGTCACACTTCAATTGGGGCTATTGAAAAGCAATACATGAAATTATTTGGGTCATGGTCAGTAAAGTATGAAAAAACGACATTTTCAACTGAAAAACAAAAATGAGTTTAATTTGACATCTCATGGCACGATCCTAAAGAGTGGCAGGTCAGACTTACAACTAGAAACAGAACAGACAGTATTATTTCTGTACACTACTGTGTTCTTGCAGTTACTTATTGAAAGGAATCAGTGGAGACTCcttccaaacaaaagacaaccaACAAGGTTACTGTATGCCTTGGTTGACACCTCATTCACTCTGGAGACAATGAATGGGCAACACATAAAGGCATCAATTATGTCCAACAGTATTTTTCCATCCTGGACACTGTGTGGAAGGCTGGGGGTGTGTGTAATATAGTACCTTCTGTGAGGCGTGCTTTACCCCCTGTAGGTTGACACAGGACTGTGGAGCATCCGACACACAGGACGACCGTCTGGGCATGACTGAACACTGTCGTGATCTTATAGCATCTGGACATTTGACGTCCATAAAATACGAGTTAGGGCTCTGTACAAGACGCTTCTTCTTGtgactcctcttctcctcctctgagGTTGGGTGTAACAGGTCCTTTGCGAGCTGAAAGAGAAACCAGAGGGTGGCCATCTTAGAAAATGCAGATGGGAAAGTCAATTTgataatctagctagctaacaagttaAAACAATGTCCATACAGCTAACAAGTTAAAACAATGTCCATACGGGAGACGTGTATATAAGTTAGTATAATCAAAAACATTTGACAAATGTTCGTTGGGTAAACGCCTGGCTAGTAACTTCAGTACTGGCTAGCCTACGCTTTTTAACGTTATCTTGTTTAGTTAAAGCCTGCGTACGTCCACTATCAAACATAGGTCAAGGAATGAGCATATCTAGTCAAACTGCATCGTGTACAAGCGCTGTCAAATGCTTAGAAACAATaaaactagttagctagctagttacaggTCAGTCCATGCTTTCTATTGCATGTACGCCGCCATATTGCGTCAATTCAGCAGACCATAGCACGCGCTTGGCACGCAGTTTAAGATTGTACGAGCTAACCATTGGTTGAATAATCCCGAATATAAATAAATCGGAATATTTGCAAAGTTCTAATACATCGATGGATGTGGTCATGTCCCGC

Function

NR:

description
40S ribosomal protein S27-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU135485 False 525 lncRNA 0.51 4 17378012 17382571
TU135486 False 435 lncRNA 0.51 2 17378012 17381210
TU135487 False 460 lncRNA 0.48 2 17378012 17381210
TU135488 False 479 lncRNA 0.36 2 17378012 17380362
TU135484 True 2344 lncRNA 0.46 2 17379455 17382489

Neighbor

gene id symbol gene type direction distance location
LOC100135972 LOC100135972 coding upstream 55593 17169568 ~ 17322419 (+)
LOC110520897 NA coding upstream 62185 17311128 ~ 17315827 (+)
LOC110534250 adar coding upstream 216614 17141664 ~ 17161398 (+)
LOC110536287 LOC106605892 coding upstream 322823 17026878 ~ 17055189 (+)
LOC110534239 LOC106594151 coding upstream 373417 17002350 ~ 17004595 (+)
LOC110520882 rab13 coding downstream 492 17383063 ~ 17394790 (+)
LOC110520798 fam189b coding downstream 12772 17395343 ~ 17421816 (+)
fdps LOC106605924 coding downstream 39485 17422056 ~ 17425996 (+)
rusc1 LOC106605889 coding downstream 43861 17426432 ~ 17452486 (+)
dap3 LOC106605893 coding downstream 102254 17484825 ~ 17495968 (+)
G117818 NA non-coding upstream 22646 17354107 ~ 17355366 (+)
G117817 NA non-coding upstream 37702 17339576 ~ 17340310 (+)
G117816 NA non-coding upstream 41810 17335857 ~ 17336202 (+)
G117813 NA non-coding upstream 43987 17333398 ~ 17334025 (+)
G117811 NA non-coding upstream 50835 17326947 ~ 17327177 (+)
G117839 NA non-coding downstream 23632 17406203 ~ 17407798 (+)
G117842 NA non-coding downstream 60320 17442891 ~ 17443612 (+)
G117864 NA non-coding downstream 117367 17499938 ~ 17500230 (+)
G117865 NA non-coding downstream 118075 17500646 ~ 17501204 (+)
G117714 LOC106605886 other upstream 304311 17073201 ~ 17073701 (+)
G117704 NA other upstream 327173 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 379651 16995630 ~ 16998361 (+)
G117048 NA other upstream 1192228 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1926324 15448845 ~ 15451856 (+)
G117735 NA other downstream 73194 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1074787 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1251268 18633839 ~ 18636041 (+)
G119160 NA other downstream 1287942 18670513 ~ 18672320 (+)

Expression


Co-expression Network