G117839


Basic Information

Item Value
gene id G117839
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17406203 ~ 17407798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135640
ATTCAAGGGCTGCAATAATAATTACAAAAAAacatcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaccatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtattacactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctaatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaaaatgtatagtataatcactcatactgtacagtactgtgagggttctagtactcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctaatcaacatgtatagtataatcacgcATACTGTagagtactgtgagggttctaggtTTCATCAACATGTCAAGTATAACACGCATACTGTagagtactgtgagggttctagttcttatcaacatgtctagtataatactcatactgtacagtactggagagagggagaactagaaCTCTCAAGGTACCTTACAGTATCAACATGAAAGCAATGAAAAATTATTCACAGTTTGGTCCAAATACATTTCTGTGTCActgactgtgtgaagagttttacaatgtgacttcagttttgaccaATGCATGTTAGCAAttggggaaaaaaatgtaaacactTGTGTGCAACAGGACAAATATA
>TU135641
ATTCAAGGGCTGCAATAATAATTACAAAAAAacatcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaccatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtattacactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataatcactcatactgtacagtactgtgagggttctagttctaatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctaatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtctagtataacactcatactgtacagtactgtgagggttctagttctaatcaacatgtatagtataatcacgcATACTGTagagtactgtgagggttctaggtTTCATCAACATGTCAAGTATAACACGCATACTGTagagtactgtgagggttctagttcttatcaacatgtctagtataatactcatactgtacagtactggagagagggagaactagaaCTCTCAAGGTACCTTACAGTATCAACATGAAAGCAATGAAAAATTATTCACAGTTTGGTCCAAATACATTTCTGTGTCActgactgtgtgaagagttttacaatgtgacttcagttttgaccaATGCATGTTAGCAAttggggaaaaaaatgtaaacactTGTGTGCAACAGGACAAATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135640 False 1195 lncRNA 0.37 3 17406203 17407798
TU135641 True 1253 lncRNA 0.37 3 17406203 17407798

Neighbor

gene id symbol gene type direction distance location
LOC110520882 rab13 coding upstream 11413 17383063 ~ 17394790 (+)
LOC100135972 LOC100135972 coding upstream 83784 17169568 ~ 17322419 (+)
LOC110520897 NA coding upstream 90376 17311128 ~ 17315827 (+)
LOC110534250 adar coding upstream 244805 17141664 ~ 17161398 (+)
LOC110536287 LOC106605892 coding upstream 351014 17026878 ~ 17055189 (+)
fdps LOC106605924 coding downstream 14258 17422056 ~ 17425996 (+)
rusc1 LOC106605889 coding downstream 18634 17426432 ~ 17452486 (+)
dap3 LOC106605893 coding downstream 77027 17484825 ~ 17495968 (+)
gba gba coding downstream 98777 17506575 ~ 17515027 (+)
polr3c LOC106605790 coding downstream 115286 17523084 ~ 17532237 (+)
G117728 NA non-coding upstream 23632 17378012 ~ 17382571 (+)
G117818 NA non-coding upstream 50837 17354107 ~ 17355366 (+)
G117817 NA non-coding upstream 65893 17339576 ~ 17340310 (+)
G117816 NA non-coding upstream 70001 17335857 ~ 17336202 (+)
G117813 NA non-coding upstream 72178 17333398 ~ 17334025 (+)
LOC110520798 fam189b non-coding downstream 1116 17395343 ~ 17421816 (+)
G117842 NA non-coding downstream 35093 17442891 ~ 17443612 (+)
G117864 NA non-coding downstream 92140 17499938 ~ 17500230 (+)
G117865 NA non-coding downstream 92848 17500646 ~ 17501204 (+)
G117883 NA non-coding downstream 128722 17536520 ~ 17543637 (+)
G117714 LOC106605886 other upstream 332502 17073201 ~ 17073701 (+)
G117704 NA other upstream 355364 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 407842 16995630 ~ 16998361 (+)
G117048 NA other upstream 1220419 16182890 ~ 16185784 (+)
LOC110535842 LOC106605985 other upstream 1954515 15448845 ~ 15451856 (+)
G117735 NA other downstream 47967 17455765 ~ 17458022 (+)
LOC110536658 LOC106577300 other downstream 1049560 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 1226041 18633839 ~ 18636041 (+)
G119160 NA other downstream 1262715 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1551338 18934673 ~ 18992769 (+)

Expression


Co-expression Network