G117943


Basic Information

Item Value
gene id G117943
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17660784 ~ 17661055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135784
gtacatgggaatttataTGGAAAATGTATGTTTCTGTGCACTGCATCATCACACACAGGGTtgtatctgcaacaagtcaattagatggaaacacatctctgatGGGGAAACGTGCAGATTGTTTTTATGCTGATGttagaatattcacatggaaatctgtcaccaattggatggaaacctgctGTCAGTGACTGACGTCAGAGAAAAAATAATAaggaaaaactgctgatgcacaaccaaatttcgaaattgtACCTGATTAATTCTACTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135784 True 272 lncRNA 0.45 1 17660784 17661055

Neighbor

gene id symbol gene type direction distance location
polr3c LOC106605790 coding upstream 128547 17523084 ~ 17532237 (+)
gba gba coding upstream 145757 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 164816 17484825 ~ 17495968 (+)
rusc1 LOC106605889 coding upstream 208298 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 234788 17422056 ~ 17425996 (+)
LOC110536418 LOC106575022 coding downstream 355740 18016795 ~ 18047915 (+)
LOC110536431 LOC107573682 coding downstream 391450 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 415916 18076971 ~ 18086938 (+)
LOC110536448 NA coding downstream 429253 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 616606 18277408 ~ 18278953 (+)
G117883 NA non-coding upstream 117147 17536520 ~ 17543637 (+)
G117865 NA non-coding upstream 159580 17500646 ~ 17501204 (+)
G117864 NA non-coding upstream 160554 17499938 ~ 17500230 (+)
G117842 NA non-coding upstream 217172 17442891 ~ 17443612 (+)
LOC110520798 fam189b non-coding upstream 238968 17395343 ~ 17421816 (+)
G117926 NA non-coding downstream 22632 17683687 ~ 17686455 (+)
G117959 NA non-coding downstream 61706 17722761 ~ 17723043 (+)
G117960 NA non-coding downstream 62189 17723244 ~ 17723459 (+)
G117961 NA non-coding downstream 63346 17724401 ~ 17724628 (+)
G117963 NA non-coding downstream 66609 17727664 ~ 17728395 (+)
G117735 NA other upstream 202762 17455765 ~ 17458022 (+)
G117714 LOC106605886 other upstream 587083 17073201 ~ 17073701 (+)
G117704 NA other upstream 609945 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 662423 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 796303 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 972784 18633839 ~ 18636041 (+)
G119160 NA other downstream 1009458 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1298081 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1595531 19131905 ~ 19259074 (+)

Expression


Co-expression Network