G117926


Basic Information

Item Value
gene id G117926
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17683687 ~ 17686455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135755
TGGACATAAAGGCACATGGACAAAACATGCTTATAGCAGGTTGAGCAACAACAAGGTAAGTGAAAAATAACAGAATAAGGTAAAAGCACCATAGTCTGGCTGTAAGGCACATGAGTACAGTAAGAAGAGCCATACTAGAAGCAGCATCACACTTTCTCCCCTTACTTCTCTTCTTCCTTCTCCCCTTTCTTCTATTCTTCCTTATCTTCTTCCTTCTCCacctttcttctcttcttccttctattcttccttctcttcttccttctcttcttccttcTCCCCTTTCTTCTattcttccttctcttcttccttctccccttccttctcttcttccttcTCCCCTTTCTTCTATTCTTCCTTCtacccttccttctcttcttccatCTCCCCTTCCTTCAATTCTTCCTTctccccttccttctcttcttcccttCATTCTCATcattctgtcctctcttc
>TU135758
TGGACATAAAGGCACATGGACAAAACATGCTTATAGCAGGTTGAGCAACAACAAGGTAAGTGAAAAATAACAGAATAAGGTAAAAGCACCATAGTCTGGCTGTAAGGCACATGAGTACAGTAAGAAGAGCCATACTAGAAGCAGCATCACACTTTCTCCCCTTACTTCTCTTCTTCCTTCTCCCCTTTCTTCTATTCTTCCTTATCTTCTTCCTTCTCCacctttcttctcttcttccttctattcttccttctcttcttccttctcttcttccttcTCCCcttccttctcttcttccttcTCCCCTTTCTTCTattcttccttctcttcttccttctccccttccttctcttcttccttcTCCCCTTTCTTCTATTCTTCCTTCtacccttccttctcttcttccatCTCCCCTTCCTTCAATTCTTCCTTctccccttccttctcttcttcccttCATTCTCATcattctgtcctctcttccattcACATCATTTTGAACACTCTTTTAGAGGGACTGAAATCACACAGACGTTCCCAATGCTATTCcttaacttgtgtgtgtgtgtgtgttggggggggggggggtattctcATGAACAAATTGAGTTACAAAACCATGATGCATGAtatcattctgaggactaagatGTCTAGTTTTAGAGGAAAgtgtcatgtaaaaaaaaaaggaaaaatacattttcattacTGAAATGCCTCCTGATTAAATTCATGGTAATTTTATAAAAAtacatctttaaaaaaaacgaacttatttaaataaaacaaaatacgTTGCTGTAGTTTCTCCATAAATTATAAAAATTGTATACTAGTTGAAGTTtacattaaactataatatttattacATACAAGCAGTGTCTGTGGATATGTCTCATTACCATTTTTTTCAAGTTCCTATAAaacttttttaaataaacatttcTTCACCCATGATGCATCATCTAGAGTAGTCCTTAGAAAACAGCTAAAGAGCTCAAATTGGGGAAAAGTCTGATTTTCATTTTATAATAAttgtcattttaaaacatttgtattttcAGTGTTATGTTTAACTCAGGCATTTTCATTAGGGGAGCAATGTTACAAAATATTATACATATTGATTTAGAACTTTTTTGGACTTCAAAAACTAATGAgaattttgtgaaaatgttggtAGAATGCATAATATCTAATAAAAAAAAGGAATAATAATTATGAAATAGATACATATAGATCCTAATCTCAGCTATTCAAGAGGACATTTTGTGAAAAATgactaaatgtattttttaattaCAGTTTCGTGAGAattacccgtgtgtgtgtgtgttattaatgGACTATAATAACAGGTCCATGCCAATTAATGTAGTATATCCaaaattgtgtgtgtgattgagtgttTATAATGTAGTACAGTGTATCTAACCACAGGTACAGGTCTACCTGTAGTTCTCAGGCTTTAGGAATGCCTTTCCTTCTCCTTCATCCGTTTTCCCTACCACTCtgttcctttcctcttctctccattactccttttcctcttccctccatctctcccttccctccatctctccctttccccttccctccatctctcccttccccttccctccatctctcccttccctccatctctcccttccctccatctctcccttccctccatctctcccttccccttccctccatctctcccttccctccatctctccctttccccttccctccatctctcctactCTGCTGAGTGAGGGATGTGAATTCTTCACACTCTTACTTCCTGGCACACGTTTTCATTACTCCGTCTTGCGGTGGTTGTTGTGAGCGGCGTGACCATTCTGCACCGCACCTTtcttctccaccccctcctcttcctcccctgacTCGTCTGTCTCTTCTTTATCGCTCCTCTCGTCCTCCACCTTTTCCTGAAGCgaaatgagagaaagaaagagaggtgtGTTTAGAAACATGTCATCCGTCCAGAGACAATACTTTTCCTTTCCACAAACTGAACCCAAACCAGACTGCTGCTCTTTATCAGCTGGGCTTTCCAAAACATATCAACGTGTGATTTCTGAATaaactttctctctcctccacccacccctcctctccc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU135755 False 459 lncRNA 0.50 2 17683687 17684278
TU135758 True 2128 lncRNA 0.51 3 17683687 17686455

Neighbor

gene id symbol gene type direction distance location
polr3c LOC106605790 coding upstream 151450 17523084 ~ 17532237 (+)
gba gba coding upstream 168660 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 187719 17484825 ~ 17495968 (+)
rusc1 LOC106605889 coding upstream 231201 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 257691 17422056 ~ 17425996 (+)
LOC110536418 LOC106575022 coding downstream 330340 18016795 ~ 18047915 (+)
LOC110536431 LOC107573682 coding downstream 366050 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 390516 18076971 ~ 18086938 (+)
LOC110536448 NA coding downstream 403853 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 591206 18277408 ~ 18278953 (+)
G117943 NA non-coding upstream 22632 17660784 ~ 17661055 (+)
G117883 NA non-coding upstream 140050 17536520 ~ 17543637 (+)
G117865 NA non-coding upstream 182483 17500646 ~ 17501204 (+)
G117864 NA non-coding upstream 183457 17499938 ~ 17500230 (+)
G117842 NA non-coding upstream 240075 17442891 ~ 17443612 (+)
G117959 NA non-coding downstream 36306 17722761 ~ 17723043 (+)
G117960 NA non-coding downstream 36789 17723244 ~ 17723459 (+)
G117961 NA non-coding downstream 37946 17724401 ~ 17724628 (+)
G117963 NA non-coding downstream 41209 17727664 ~ 17728395 (+)
G117964 NA non-coding downstream 44576 17731031 ~ 17731264 (+)
G117735 NA other upstream 225665 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 262027 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 609986 17073201 ~ 17073701 (+)
G117704 NA other upstream 632848 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 685326 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 770903 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 947384 18633839 ~ 18636041 (+)
G119160 NA other downstream 984058 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1272681 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1570131 19131905 ~ 19259074 (+)

Expression


Co-expression Network