XLOC_020975


Basic Information

Item Value
gene id XLOC_020975
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12777889 ~ 12786441 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042354
GGCGTTCTCTCTGGAGCTTTTCAACAGCGCAGAAACTTTTGCTTCAGTCTACAAATCAACAAGCCACAAAATCAACCAAGTCAGCGCAATCCAGCATGGCCTTCAGCGGGATCAGACCAACAATCTGAGATCCCACCACTGGAAGGTTCAAGTCCTGCACATGAACAGACATCCTGTTGATCAATCTGACtctgtttcttctcctcagtgtcagtatattgcgcacatTCATGATCACATTCAAATATGCATATGCTTTACATCattgtttctatgtttgtttatacTACTACTAGTATCATTCATAGCACTTAATTTTTGCATCTCGTGTTTAAATACacaatgaacagcagctacgctaattattttctttattctccatttccacctgagGATCCTCATcctgaggcctctagagattgtgcaggGCCATTGATGCGATCaaagacctgtgaagaaatgatgccaaggtatccataatgctagaccaggctgtatcctgagcagatgctgcgGCAATCATGGAGGAGCAgggagcatgagactgattcctgataTGCCAATTCAGATTTGAAGTTGACTCACCTTGGCGTCTCTACAGATCTCTTCATACACCGTGTGCATTGGCGTCAGCTCAAAGTCCAGGATATTAGTGGACACTTGCGCCAGATTGGACTCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042354 True 681 lncRNA 0.44 2 12777889 12786441

Neighbor

gene id symbol gene type direction distance location
XLOC_020974 cnot9 coding downstream 14539 12752286 ~ 12763350 (-)
XLOC_020973 plcd4a coding downstream 31350 12729329 ~ 12746539 (-)
XLOC_020972 CR847870.3 coding downstream 51333 12699121 ~ 12726556 (-)
XLOC_020971 adarb1a coding downstream 84052 12641580 ~ 12693837 (-)
XLOC_020970 cep70 coding downstream 151682 12604302 ~ 12626207 (-)
XLOC_020976 glsa coding upstream 45234 12831675 ~ 12862415 (-)
XLOC_020977 nab1a coding upstream 83834 12870275 ~ 12890921 (-)
XLOC_020978 mfsd6a coding upstream 124795 12911236 ~ 12925741 (-)
XLOC_020979 NA coding upstream 146849 12933290 ~ 12940709 (-)
XLOC_020980 NA coding upstream 163379 12949820 ~ 12950292 (-)
XLOC_020969 CR847870.5 non-coding downstream 192935 12584839 ~ 12584954 (-)
XLOC_020962 NA non-coding downstream 1079214 11697272 ~ 11698675 (-)
XLOC_020961 NA non-coding downstream 1103468 11672189 ~ 11674421 (-)
XLOC_020951 NA non-coding downstream 1673618 11102905 ~ 11104271 (-)
XLOC_020981 NA non-coding upstream 171781 12958222 ~ 12964877 (-)
XLOC_020984 BX908726.1 non-coding upstream 315295 13101736 ~ 13112322 (-)
XLOC_020985 NA non-coding upstream 401420 13187861 ~ 13188332 (-)

Expression


Co-expression Network