G118009


Basic Information

Item Value
gene id G118009
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17809980 ~ 17812356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135863
TTCTggtttcagtttttatttcaaATTAAGTTTGTGATAGCATTTTCCACACACTCGTTTGCCTTTTTCAAAATAATACAAAATCCATATACTTCTACGCAATAACTTCTGATCATAAACTCTGACACGGTAGCAACAAAGGGAATTTGCTACAGCTCCTcttaagaaaaaaaataaattacatgtatttttttataaTAGATAAATTACTATCCTTTTTTTCAGACTTTTTAATATAAAACTTTTTGTTTCTACTAAAAACGATTTAAAACATGAAAATGACATTCACAGATAGACTCATACAAGAATACACCCAGGGCTGCATACtcacacaaataaacacaaatAGGCAACTTcacagagacaggaagacaaacacacacacacaacacacaccatctAAGGGTAGCAAAATATAATTTGTTCTTCTTAATATGATGACTGAAAAATATGAATACTTTATATGAATATATGCATACAGTTAACATGTACAGTATGCCTAAAATTCAAATCATACCACAATATAGGAGATATTTATGTATATGTATATTAAGTATATGTTCACACAGAAATATAGACATACAAATGTAATATTGACTGACAAATATACACATCGTTCacctgtggagtgtgtgtgtgtgtgtgtgtgtctgtatgctgtagacgtaacatacagtaacattttACAACTATGTCAAGGCATAGGGGCAATATCTGTTAAAAAGAGCTTTGTTTAAGTCCAAGACCTTTTTAAACATTTTCAGTAAAAACACAAATTAGTCAGGGAGTGTTACTTGCTCCTTTGggagttaaaggcccagtgcactcaaAAACGTGAttctcctgtgttttatataataatactgtgaaattgtgaaaatgatgataatgcattttagtgtaagagctgtttgaaaagaccgcctgaaagttctccctgttttggtgggatgaagTTTTGGTctgcatggtgacatcaccagttaGTTAAGAGACCAAAAAAGAGAAAtagtttcaaacctctctgccaataacagctacagtagttttcagtttcctagctaaattcttgcatGAGAAATGTCTCTTTGCTAAGAAgtgattttgtttgtttttgaccatttgaattgaaaacagTCACAGTAgggtacttcattgttacccagaaaggatttgatattgagataaaaacagctgaatTGGACCTTTCAGACACAGCTTGCTCTTCAGCATATTGTGGCAAATGCATTTCTGAAAATGAATACATAAATGAATACAATGTTATTTCAATACCTACCATTCTTGAACATATTGATGGGTCAGATGATACAAATGTCTCAGGTAGTGGTATATTTTCTGTATGTAGCAGAGGTGGTTGGGTGTAACCTTGGCTGAGGCCTGAATACTGGTATTAGCTCTCAGGGGTAATGCCTTGGCTTTAGTTCAGTGGGCTAACAGTCGTGAGGGCACAGGTTGGATACCTGGACAGTCACCAATAGACCATACAGTCGTTTCATTCTACCCCTGCTTGTTTTCAGATTGGGGGCGTTCTCAGGTTATGGACATCTCTCCACTAATGTCCTTTAAAAACAGGTCACTTGTACTAGGCCACCATTTTACATTTTGGTATGTTTTCACCAAATGTTGATGATGCTGTATAAACACTGAGGAGACATTTAAAATAGTTTTTTGGCATATAGAACACAAACATAGAAAACATACATCATAGACTTACACTGCTATTGGGTTATACCTTCTGGGTCCCATCTATCCATACTAGCATACTACATAGTATGCATGGACAATACTTCACCTCACACTAAGTGGTATGCAAGTTTGGCTACTGGGACAGAGCTCTGGACCCAGGTCCTGGGTGTAcatacatcatccacagcatctCTCAGCCATAGAAACAGAAAGAGTGGACATAGAAATCAGATATGTTCCATATTATGGAGCTCTGTACAATGTTATTGGCACATTTTTTGCATATGCAGATAACCCACAAAATGTAAGAAATGTAGTTAGTAACAAAGTAAATCACATTCCAAAACATCCCCTCTATAACGGCTGTACATCTGGCCCAGAACACAATTCAATCACCACTTTATGTGGTAATATATCCACTCCATTTCTATGGTCTGATCATTTCTATGGTAACCTGCGCTTTGACTTCTAACCCCTGAAACCCTGACCCCTGGCTGATCTCGGCTGGAAGCCTGTTATTGGCTGGTCAGTGCCTCTTGGCCCGCTGAGCACTCTGGGTACATGAGGCGCAGCAGGCAGTCTTGTAGTAGGAGTAGACACACAGTCTGGCCTGAACCACCATCACACAGTTATGACGCAGGTCCCTG

Function

NR:

description
ADAMTS-like protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135863 True 2354 lncRNA 0.45 2 17809980 17812356

Neighbor

gene id symbol gene type direction distance location
polr3c LOC106605790 coding upstream 277743 17523084 ~ 17532237 (+)
gba gba coding upstream 294953 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 314012 17484825 ~ 17495968 (+)
rusc1 LOC106605889 coding upstream 357494 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 383984 17422056 ~ 17425996 (+)
LOC110536418 LOC106575022 coding downstream 204439 18016795 ~ 18047915 (+)
LOC110536431 LOC107573682 coding downstream 240149 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 264615 18076971 ~ 18086938 (+)
LOC110536448 NA coding downstream 277952 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 465305 18277408 ~ 18278953 (+)
G117974 LOC106609264 non-coding upstream 63467 17745127 ~ 17746513 (+)
G117967 NA non-coding upstream 71274 17735619 ~ 17738706 (+)
G117964 NA non-coding upstream 78716 17731031 ~ 17731264 (+)
G117963 NA non-coding upstream 81585 17727664 ~ 17728395 (+)
G117961 NA non-coding upstream 85352 17724401 ~ 17724628 (+)
G118014 NA non-coding downstream 2648 17815004 ~ 17815832 (+)
G118011 NA non-coding downstream 3516 17815872 ~ 17823926 (+)
G118003 LOC106594717 non-coding downstream 33453 17845809 ~ 17853491 (+)
G118045 NA non-coding downstream 74489 17886845 ~ 17889352 (+)
G118010 NA non-coding downstream 119199 17931555 ~ 17932511 (+)
G117735 NA other upstream 351958 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 388320 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 736279 17073201 ~ 17073701 (+)
G117704 NA other upstream 759141 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 811619 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 645002 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 821483 18633839 ~ 18636041 (+)
G119160 NA other downstream 858157 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1146780 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1444230 19131905 ~ 19259074 (+)

Expression


Co-expression Network