Gene
RNA
| Item | Value |
|---|---|
| gene id | G118003 |
| gene name | LOC106594717 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 17845809 ~ 17853491 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: thrombospondin type-1 domain-containing protein 4-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU135854 | True | 675 | lncRNA | 0.43 | 2 | 17845809 | 17853491 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| polr3c | LOC106605790 | coding | upstream | 313572 | 17523084 ~ 17532237 (+) |
| gba | gba | coding | upstream | 330782 | 17506575 ~ 17515027 (+) |
| dap3 | LOC106605893 | coding | upstream | 349841 | 17484825 ~ 17495968 (+) |
| rusc1 | LOC106605889 | coding | upstream | 393323 | 17426432 ~ 17452486 (+) |
| fdps | LOC106605924 | coding | upstream | 419813 | 17422056 ~ 17425996 (+) |
| LOC110536418 | LOC106575022 | coding | downstream | 163304 | 18016795 ~ 18047915 (+) |
| LOC110536431 | LOC107573682 | coding | downstream | 199014 | 18052505 ~ 18071232 (+) |
| trim108 | LOC106573777 | coding | downstream | 223480 | 18076971 ~ 18086938 (+) |
| LOC110536448 | NA | coding | downstream | 236817 | 18090308 ~ 18094143 (+) |
| LOC110536617 | NA | coding | downstream | 424170 | 18277408 ~ 18278953 (+) |
| G118011 | NA | non-coding | upstream | 21883 | 17815872 ~ 17823926 (+) |
| G118014 | NA | non-coding | upstream | 29977 | 17815004 ~ 17815832 (+) |
| G118009 | NA | non-coding | upstream | 33453 | 17809980 ~ 17812356 (+) |
| G117974 | LOC106609264 | non-coding | upstream | 99296 | 17745127 ~ 17746513 (+) |
| G117967 | NA | non-coding | upstream | 107103 | 17735619 ~ 17738706 (+) |
| G118045 | NA | non-coding | downstream | 33354 | 17886845 ~ 17889352 (+) |
| G118010 | NA | non-coding | downstream | 78064 | 17931555 ~ 17932511 (+) |
| G118085 | LOC100380759 | non-coding | downstream | 92722 | 17946213 ~ 17947795 (+) |
| G118082 | NA | non-coding | downstream | 98819 | 17952310 ~ 17953294 (+) |
| G118105 | NA | non-coding | downstream | 129052 | 17982543 ~ 17983202 (+) |
| G117735 | NA | other | upstream | 387787 | 17455765 ~ 17458022 (+) |
| LOC110520798 | fam189b | other | upstream | 424149 | 17395343 ~ 17421816 (+) |
| G117714 | LOC106605886 | other | upstream | 772108 | 17073201 ~ 17073701 (+) |
| G117704 | NA | other | upstream | 794970 | 17050132 ~ 17050839 (+) |
| LOC110536275 | s10i | other | upstream | 847448 | 16995630 ~ 16998361 (+) |
| LOC110536658 | LOC106577300 | other | downstream | 603867 | 18457284 ~ 18481741 (+) |
| G119153 | LOC106605761 | other | downstream | 780348 | 18633839 ~ 18636041 (+) |
| G119160 | NA | other | downstream | 817022 | 18670513 ~ 18672320 (+) |
| G119245 | stl2 | other | downstream | 1105645 | 18934673 ~ 18992769 (+) |
| LOC110503718 | LOC102193556 | other | downstream | 1403095 | 19131905 ~ 19259074 (+) |
