G118082


Basic Information

Item Value
gene id G118082
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17952310 ~ 17953294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135946
CCATCCCTCCAGCCCATTCCATCTCTCCAGCccatcccatctctccatcccattccatcCCTCCAGcccattccatcCCTCCAGCCCATTCCATCTCTCCAGCCCctcacatccatccatccatcccatcccatctatccctcgctctctttctctctgaaagTGTTTATATCAGCTTATTCACACAATACTGGAGGTAAGTAGAATTTTAGTGAAATAGAATAACCACCTGTTTCTATTTGATCTGTGCTTGTCGTCTTCCTTCTAGTTCACACCTCCATTACTCCCTCACTGCTTTAGTGAGGGGAAGCTGAGAACATTGTTGCTCCTGGGGATCGGAGGAGGCAGATTTGGTTTGGTTACCTATTTCATCCATAACACTGTGCATAATTGCTAAGCTGGTACTGTATTGTGGTGAGGTGACGTGCTAGTTTGTGTCAAGGTGCGATCAGCTAAATGTAGTAAAACAAATGACTCCACTAGGATTAACATAGTGAGGACAGACTGGGCTCATACCATAAGGGTTCTACACATCTTCTCCCCGTGTTGGGTAGCTAGGTGTGTGGGTTGCTTTTCATTCAGCTTGTCATGGTTAACATTTCAATATCGTGGGGGTAAGAAAGGTCTCTTGGGGGGGTAGAAGGGACCTCCTCGGCCCCCGCCGAATGGAGGGCCAGGACGCTTGCCCCCGCGGAACATGGGTGGCTCTCGGTTTAGGTGCGGGTGGACAGGGGGGCCGCGAGGGTGGAGTAGAGGTCTCTGGGGGGTGGAGTTGATGGGGGGGCAGGGATTAGGGGAGGGTAGGCGCAGGAGGGACGGCGAGGGACGGTGGGgatggttggggttggggtgtCGGGGCTGGGCAGGCGGGCTAGCGGGAGGGTGCTGGAGCGGAGGAGCTTGGGGGCGAGGAAGCAGTGGGTCgcctgagggagagggaggggtggag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135946 True 949 lncRNA 0.38 2 17952310 17953294

Neighbor

gene id symbol gene type direction distance location
polr3c LOC106605790 coding upstream 420073 17523084 ~ 17532237 (+)
gba gba coding upstream 437283 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 456342 17484825 ~ 17495968 (+)
rusc1 LOC106605889 coding upstream 499824 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 526314 17422056 ~ 17425996 (+)
LOC110536418 LOC106575022 coding downstream 63501 18016795 ~ 18047915 (+)
LOC110536431 LOC107573682 coding downstream 99211 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 123677 18076971 ~ 18086938 (+)
LOC110536448 NA coding downstream 137014 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 324367 18277408 ~ 18278953 (+)
G118085 LOC100380759 non-coding upstream 4515 17946213 ~ 17947795 (+)
G118010 NA non-coding upstream 19799 17931555 ~ 17932511 (+)
G118045 NA non-coding upstream 62958 17886845 ~ 17889352 (+)
G118003 LOC106594717 non-coding upstream 98819 17845809 ~ 17853491 (+)
G118011 NA non-coding upstream 128384 17815872 ~ 17823926 (+)
G118105 NA non-coding downstream 29249 17982543 ~ 17983202 (+)
G118106 NA non-coding downstream 32812 17986106 ~ 17986338 (+)
G118107 NA non-coding downstream 45160 17998454 ~ 17999115 (+)
G118108 LOC106575046 non-coding downstream 46234 17999528 ~ 18004502 (+)
G118109 NA non-coding downstream 51750 18005044 ~ 18005347 (+)
G117735 NA other upstream 494288 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 530650 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 878609 17073201 ~ 17073701 (+)
G117704 NA other upstream 901471 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 953949 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 504064 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 680545 18633839 ~ 18636041 (+)
G119160 NA other downstream 717219 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 1005842 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1303292 19131905 ~ 19259074 (+)

Expression


Co-expression Network