G118108 (LOC106575046)


Basic Information

Item Value
gene id G118108
gene name LOC106575046
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17999528 ~ 18004502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU135985
agtgagaaacagagaaatagtgagagagaaggtaagagagggagagaaagggatgaacagatatgagagaaagggaggagggcaAAAGTAGTAGAATGTggcagagaaggagggaggagttgagagagggtgaggagggagggcggatgatagagaggaggagggagggaggagtagagggttggagggaggagtagagagaggggaggagtgagggaggaggatagagaggagcagaagggagggcggaggatagagagggggaggagtagaGGGGGTGAGTACAGCATCTACTAAGATATAAAAAGGCAGTTGAAATAAACAAGACATATTATTTCTGACCAATCAGCGGTGGTCTCTGCAGTAGAAAACATACATGGAAAAGAGATCACAAAAATCTGTGCAATCAGTTTCTCTGTCACAAAACAGCTGTATAAAAAACACAAGTAGGAAGAAGTGGCCCTTAACCACAGGCCCGGGATCAGGTGTGTTTTCAACCCCTAATGGTAAAAGTTAGGATTGGGGGTAGGAAAAATCTGATCATAGACCTGTGGTTAAGAGCAACTTATACCTCAAGCATAAAAACATCCCCCAGCCCCAAGTAAAGACAGTAGGTAGGTAACATGGAGGCTACCAGTGATTGTGTGTTCAGTTGTGGCTCTCCTTGGAGAAAGCTATAGGGAGTATGGATGCAACCATATGAACTTGTTTTAGCAGTGCTTTACTGGAAGCTCTGCATATAAACAGTTGATTAAGTATAAGTAAACTCTTTGTAAACCCTGTATCGTGTATTTCCTCTggaactcagttggtagagcatagtgcttgcaatgccaggacagtgggtttgattccagggaccacccatatgtgaaaatgtatgcacaaacgactgtaagtcgctttggataaaaagcGTCTGCTGAATGGCATATGTGTCATTAGTAAATACATGTGTATTAATGATTTGTTATGAGGAATATTTCAATCATGTTTTAGTCCTATTATGTATAGCAGCTTACGATGATGGTGCAAAATAAATATTCATACTGTCTCCCTTTTAGCTCTGATCCTCACGTTTTTAAGTTTGACGAGCGCCAAGAAGCACACAGGAGATAGCAAGCTCTGATCATATCCTCCAGTCAGACCTACATAATCAACTATAAAATACACCCAGGAGATAGCAAGCGCTGATCATATCCTCCAGTCAGACCTATATAATCAACTATAAAATACACCCAGGAGATAGCAAGCGCTGATCATATCCTCCAGTCAGACCTACATAATCAACTATAAAATACACCCAGGAGATAGCAAGCGCTGATCATATCCTCCAGTCAGACCTACATAATCAACTATAAAATACACCCAGGAGAAGAGGCAACTGTCAAtctaaaaactgaaataaattagCCACTGTCGTTAGTTCATAGAAGACTATGATGTATATGTATAGAATACTATTGTGTTGTACACATGACCACTGCACAGCTTGGAGTAGAGGTTGCCTTGCTGTTGTGGGATCTGTAGGTAGCTAGTTTTGCCCAACAGACCCCTGGAAGCCAGATAAGAGATTGAAGGCAGGAATTAGGCGTTGTGTACTGTGTTATTCGACTGATTGTGCACTGTGCTATTAAGAAAGACAAGCAAATTATCAAAATGCAGTAGAAAATGCTTTGAAAGAATaaaatgctttgtttttttgtaCACATCCTATTTGGTAAAGGCACAAAAGTCCAATCATCCCCCTAAAATTTGTCCCATCATAACAGTAAAAACCACAAACAAACCGCTGTACAGCAACTTTCCCAAGAGCATCAGTCAACCAATCGGTCAACCAATTGTAAGTTCAAAGAGAGAAACACAGCTGCCAATtaataaataaaggtaataaataAATGCAGCGTTGTCAAGTCAACATGTGAATAAATAAACaggatgtctgtctctgtctgtctgtgagtggaCTCTTCTCTCAGGGTGGTCTTTAGAGTCTCTCACTGAGCCATTTAAAGGATTAAGTTGTCCCTAGAAGCTGATCTAAGGTCTGTTTGGTATTCTATCCCCTACCGGTTAGGCCATTGAAATGTGATTTACTGTTTAACGGATAACCCGCTTCACATTTCTCCACACAGAATAAAACCCAGTTGTGGTTCATTCGTTTCACAGTCATAATTGATCTTCACCCAAAACACCTTGCATTCGTCTTCACAAACAGATTGTGTCATGTTGATGGATTGACATTGAATCGATTCTAAACCTCTTTAGACTTCAGTAGAGGTCCCTGCCACGTCCTCTTAGATGTTGTTCAGCTCTAGAGGTCATTCAGTAGTCTAATGGCATCTGGCTAGTTGGATTATTCCTCACTTCTATCCGGAATGCCTGTCTAttgaactgtctgtctgctgttacTCAGCTCTAGAGGTCATTCAGTAGTCTAATGATTATTCCTCACTTCTATCCGTAATGCCTCAGTCTAttgaactgtctgtctgctgttattCACTGGAAGCATCATCTCTGAGGAGATTCCAGGAATATCATTCCAGGAATATAACTATCCTTAATCCCCAAATCTTATTCCACCTGTCCTTCTAACCATCCTCTCCTCGTCACATCTCACCTCCACCCACCTGAAACCCAAATATTCCTAAGCCAACAGTGTTTCGATTAAGTTTGCATAGTGGCATTTACCTTTTCTTAAGTGGAGTAAGAGAGTATACCATTCGGTCAATCAGAGATCCAATATTCTATAAACAAGCGATGGGCTATAAGAGGTGCTTACCAACCTTCCAATCTACAACCACTATTTGTGCAAAAAAATCTGATTGTTATGGAACTGTGATTATGATTCACAAGGACACATTCTGCCCTCGTTGTAATAACTGTAGTCTCTCAGATATCATTTTCATTAATGGTCCTAATTGCGTTTAGGTAGTTGCAAAAGATCCATCATTAAGAAAACTCATCAGCACCTAAACCTATGGCTGCAGTCCAAATTCAAATTAGAGAGTGATGATCGGAGGCAACATCCTTAGTGGAAATCTGGAAGTTGAGCTTAAAAACAACCAACTTAAAGCTATTCATGTATCTAGCaagctaacgtagctagctagctagctaaagtgctccatagctggctagctagtttttTAGTTTGGTCATTTATTGCAATACATTTCAGAATTCCCCAAAATATGTTTATGAAGCTAGCTAGGTTTTATAGGCTCCTCACTACGAGACTAAGCCAATTTGGCAACGCTAAAAtcaatgtcatatatatatatagcaagcTAGAATCATCATTTTGTCTGACAGGCCGAAAATGCAGCCGTGATGAGTGAACGTGACATTCGCGGCCACCGGAGTATGATACATGACTACAATTTGCATTGAATTGTGGGTCATATAAACCCCGCAAGTGATCAAAGTTCTTCACTCGCTCCCTCGAGCTAAATCGAGGGCCGAGGGGGAAACGTTAGTGAATTGGACCTCCACTTAAGATGGCAATCAAATTGCATCCGGTTTCAaaggggattcccccaagggagAGTGGCTAgtacgagggctgaggggctaaACATAAAGTGTTTGGACTGCAGACCATTTCTACCCCTGACTCTCCCTATCACAGCAGCTTTAGCATGTTGACGTAGTCACACTAGCCTGCTGGGCGGAGTGTGCTCAGTGCATCAGGTCTATAAAGGGGCGGGGTTAACCCTGCTCTTACACTCCCCCCTTTTCAAAGGCTTTGCCGTGATTGAATGAGCCTGGACCCGCCCCTGACAGGTCTTTACAGTCTTTTTCCCAGTCTTCCCGGCAACAGGCTGGCTTTGGCACCCGATTGGCTGCTGCTGGCTTTGGAGGTTGTTGAAGGGCGTGGTGGAAGAGATTACGCTGTCCTGCATGGCTGGACTGCCCCTGGTGGTGGGAGGTGGCATGACAGGCAGCAGCTGTTTCCCCTCCATTGGTTTCCAGGGGGAAAGGATGGGCACTACAAGGACCGAGGTGGGACCGGGCTCAGAATAGAGCCCTGCTTTGTTGCTTGatgattctccctctctctctttgctgtcCTCGTCttcctttctctcattctcttggTCGATGGTGGGGTCCTGGGGGTGTGGGGGTACCCCTGAAGTTGCAGAGGtgacctctcccccctccttccccatcttctctcctccactGGCGGTGAGCCTCTTAaagagtacaggagggggggTGTCAGAGTCTGTGTCTGACCAACTCAGTCTG

Function

NR:

description
circadian-associated transcriptional repressor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135985 True 4260 lncRNA 0.47 2 17999528 18004502

Neighbor

gene id symbol gene type direction distance location
polr3c LOC106605790 coding upstream 467291 17523084 ~ 17532237 (+)
gba gba coding upstream 484501 17506575 ~ 17515027 (+)
dap3 LOC106605893 coding upstream 503560 17484825 ~ 17495968 (+)
rusc1 LOC106605889 coding upstream 547042 17426432 ~ 17452486 (+)
fdps LOC106605924 coding upstream 573532 17422056 ~ 17425996 (+)
LOC110536418 LOC106575022 coding downstream 12293 18016795 ~ 18047915 (+)
LOC110536431 LOC107573682 coding downstream 48003 18052505 ~ 18071232 (+)
trim108 LOC106573777 coding downstream 72469 18076971 ~ 18086938 (+)
LOC110536448 NA coding downstream 85806 18090308 ~ 18094143 (+)
LOC110536617 NA coding downstream 273159 18277408 ~ 18278953 (+)
G118107 NA non-coding upstream 413 17998454 ~ 17999115 (+)
G118106 NA non-coding upstream 13190 17986106 ~ 17986338 (+)
G118105 NA non-coding upstream 16326 17982543 ~ 17983202 (+)
G118082 NA non-coding upstream 46234 17952310 ~ 17953294 (+)
G118085 LOC100380759 non-coding upstream 51733 17946213 ~ 17947795 (+)
G118109 NA non-coding downstream 542 18005044 ~ 18005347 (+)
G118122 NA non-coding downstream 24114 18028616 ~ 18029709 (+)
G118123 NA non-coding downstream 25341 18029843 ~ 18036218 (+)
G118124 NA non-coding downstream 29884 18034386 ~ 18034961 (+)
G117735 NA other upstream 541506 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 577868 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 925827 17073201 ~ 17073701 (+)
G117704 NA other upstream 948689 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1001167 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 452856 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 629337 18633839 ~ 18636041 (+)
G119160 NA other downstream 666011 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 954634 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1252084 19131905 ~ 19259074 (+)

Expression


Co-expression Network