XLOC_020979


Basic Information

Item Value
gene id XLOC_020979
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12933290 ~ 12940709 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041942
TCACATTTCATTACATACTGTGTAATTAGTAtccttattgttattattttaatatgaagaTTTTTGTATTAAACATCTGGAATATTATATCTGTAAGCCAGTAGGTTTGACTGAGACATAGCTTAATAATGCAAACCCCTTTAGTTTTTCCACAGAACCTCCAGGATGCATCTGTTCTTAGTTCTTCCCCTGGTGCTGAAAGTCCAGTCTATCTCCATGGGCCACAATGTCACCTGTGACTGTATCTGCCATGAGGGATTCAAAAGTGCTTACTGCTCCAACAATAATATCACCCAACTGCCCATCGCTCTTCCACCATTCACAGAAACCCTGAATCTGTCCCACAACCACCTGAACACCATCCCCCCACGAGCCTTCAACACCACACGAAAACTGCATTTCCTTTACCTGAACGACAACAATATTAGCATGTTAGCAGACGGGGCGTTCTTTCTACTGGAAGGTCTTAGGTGGTTGGACTTGAGTCGAAATCAAATATTATCCTTAAGTGAAGGGTTTTCAAAGGGTCTCAGTTCCCTTCAAGGTCTTTCACTGGCTGAGAACAGATTAACCAGCATGGATAGCAGTTATTTTCTCCACATGGACTCATTACAAAGACTCAATCTCAGCCATAACTCCATCCACACCATCAAAATGAGGGCGTTTGGGTCCATAAGTACGCTACGCCAGCTACAACTTGACTGGAACAAAATAACGATCCTCAATAATGGTATCTTTTCCATGCTGCGAAATCTTGAAGACTTAAATTTGCATCACAACCAGATACATAGCTTGGACGTCGGGGTACTTTCACCATTGACCAGCCTTGGTAAACTAGACCTTACCAACAACAACCTCTCCACGATTCAATTCAAGACCTTCTTGAGTCTCAACACGTACAGCACTCACATAATGCTGCGGGGAAACCCCTGGCGGTGTGACTGCGATCTCCAACGAGTCTTCCAGAAGCTCTGTAACGTCAAACGGCTCTTTCTGGATGACTACGACAGCCTCACTTGCTACTCATTTAACGACGAATTTAACGGAAACCACACTGTTTTTAAAGCGGTTGAGCTCTGTGTTGCAGAGATGGTTACTGTCCTGGTCATTACAATCACTGTGGTCATCACGGTTGTGGCGGCAATTGTCATGGcggagaaaaaaaggaaaaagaagaaCAAGGAAAAGCATTGGACGGAAGTCGGCGAGGTGTCCTGTGGATCACAagactgaatgaatgacaaaatatACATTAATCAATAACTCAAACTCTGATTGCTTATTAAGATGATAAAATCTCACGTGAACTGTAACTGAATGGGCAATATTCACAGctaggctgcgtccaaaaccgcgtacttccatactatacagtatgctaaaatcagtttgctagcagagtagtatgtccaaattcataaaattcaa
>TCONS_00041266
ATGATGCATCTGTTCTTAGTTCTTCCCCTGGTGCTGAAAGTCCAGTCTATCTCCATGGGCCACAATGTCACCTGTGACTGTATCTGCCATGAGGGATTCAAAAGTGCTTACTGCTCCAACAATAATATCACCCAACTGCCCATCGCTCTTCCACCATTCACAGAAACCCTGAATCTGTCCCACAACCACCTGAACACCATCCCCCCACGAGCCTTCAACACCACACGAAAACTGCATTTCCTTTACCTGAACGACAACAATATTAGCATGTTAGCAGACGGGGCGTTCTTTCTACTGGAAGGTCTTAGGTGGTTGGACTTGAGTCGAAATCAAATATTATCCTTAAGTGAAGGGTTTTCAAAGGGTCTCAGTTCCCTTCAAGGTCTTTCACTGGCTGAGAACAGATTAACCAGCATGGATAGCAGTTATTTTCTCCACATGGACTCATTACAAAGACTCAATCTCAGCCATAACTCCATCCACACCATCAAAATGAGGGCGTTTGGGTCCATAAGTACGCTACGCCAGCTACAACTTGACTGGAACAAAATAACGATCCTCAATAATGGTATCTTTTCCATGCTGCGAAATCTTGAAGACTTAAATTTGCATCACAACCAGATACATAGCTTGGACGTCGGGGTACTTTCACCATTGACCAGCCTTGGTAAACTAGACCTTACCAACAACAACCTCTCCACGATTCAATTCAAGACCTTCTTGAGTCTCAACACGTACAGCACTCACATAATGCTGCGGGGAAACCCCTGGCGGTGTGACTGCGATCTCCAACGAGTCTTCCAGAAGCTCTGTAACGTCAAACGGCTCTTTCTGGATGACTACGACAGCCTCACTTGCTACTCATTTAACGACGAATTTAACGGAAACCACACTGTTTTTAAAGCGGTTGAGCTCTGTGTTGCAGAGATGGTTACTGTCCTGGTCATTACAATCACTGTGGTCATCACGGTTGTGGCGGCAATTGTCATGGcggagaaaaaaaggaaaaagaagaaCAAGGAAAAGCATTGGACGGAAGTCGGCGAGGTGTCCTGTGGATCACAagactga
>TCONS_00041267
CACTCCTGTGACTCAAGAATGACCGTCTCACTCACAACACTGAATCCTGATGACAGAGCATCTACAACCctccacaagtcccaaaccagtGGTGaaagtggcgaggaacaaacttcactaattgacgaaagtgaaggaaaaaaattgagagaaaccaggctcacaACCAAATCTCCTCCGGTCAAACTTTCTGctcagagctgcagtctaggtgccggaggctggagaacgctggacgtccatcgttgAGAAGCTGCAGATCTGCTACTGTACAATAGCGTTTCCCTCCCAGATCCAGACACTGTTTCAtgtacacagacacaaacacacacctttgGCTGCTCCTTTGATGACAGACACCAAACTCTGTTTTTCCACAGAACCTCCAGGATGCATCTGTTCTTAGTTCTTCCCCTGGTGCTGAAAGTCCAGTCTATCTCCATGGGCCACAATGTCACCTGTGACTGTATCTGCCATGAGGGATTCAAAAGTGCTTACTGCTCCAACAATAATATCACCCAACTGCCCATCGCTCTTCCACCATTCACAGAAACCCTGAATCTGTCCCACAACCACCTGAACACCATCCCCCCACGAGCCTTCAACACCACACGAAAACTGCATTTCCTTTACCTGAACGACAACAATATTAGCATGTTAGCAGACGGGGCGTTCTTTCTACTGGAAGGTCTTAGGTGGTTGGACTTGAGTCGAAATCAAATATTATCCTTAAGTGAAGGGTTTTCAAAGGGTCTCAGTTCCCTTCAAGGTCTTTCACTGGCTGAGAACAGATTAACCAGCATGGATAGCAGTTATTTTCTCCACATGGACTCATTACAAAGACTCAATCTCAGCCATAACTCCATCCACACCATCAAAATGAGGGCGTTTGGGTCCATAAGTACGCTACGCCAGCTACAACTTGACTGGAACAAAATAACGATCCTCAATAATGGTATCTTTTCCATGCTGCGAAATCTTGAAGACTTAAATTTGCATCACAACCAGATACATAGCTTGGACGTCGGGGTACTTTCACCATTGACCAGCCTTGGTAAACTAGACCTTACCAACAACAACCTCTCCACGATTCAATTCAAGACCTTCTTGAGTCTCAACACGTACAGCACTCACATAATGCTGCGGGGAAACCCCTGGCGGTGTGACTGCGATCTCCAACGAGTCTTCCAGAAGCTCTGTAACGTCAAACGGCTCTTTCTGGATGACTACGACAGCCTCACTTGCTACTCATTTAACGACGAATTTAACGGAAACCACACTGTTTTTAAAGCGGTTGAGCTCTGTGTTGCAGAGATGGTTACTGTCCTGGTCATTACAATCACTGTGGTCATCACGGTTGTGGCGGCAATTGTCATGGcggag

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0009583 detection of light stimulus biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0009416 response to light stimulus biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006812 cation transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0031045 dense core granule cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000088638

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041942 False 1428 lncRNA 0.42 1 12933290 12934717
TCONS_00041266 False 1071 processed_transcript 0.46 2 12933485 12934589
TCONS_00041267 True 1383 lncRNA 0.47 4 12933560 12940709

Neighbor

gene id symbol gene type direction distance location
XLOC_020978 mfsd6a coding downstream 7549 12911236 ~ 12925741 (-)
XLOC_020977 nab1a coding downstream 42369 12870275 ~ 12890921 (-)
XLOC_020976 glsa coding downstream 70875 12831675 ~ 12862415 (-)
XLOC_020975 NA coding downstream 146849 12777889 ~ 12786441 (-)
XLOC_020974 cnot9 coding downstream 169940 12752286 ~ 12763350 (-)
XLOC_020980 NA coding upstream 9111 12949820 ~ 12950292 (-)
XLOC_020981 NA coding upstream 17513 12958222 ~ 12964877 (-)
XLOC_020982 ahr1b coding upstream 38504 12979213 ~ 13042992 (-)
XLOC_020983 ahr2 coding upstream 105561 13046270 ~ 13165186 (-)
XLOC_020984 BX908726.1 coding upstream 161027 13101736 ~ 13112322 (-)
XLOC_020972 CR847870.3 non-coding downstream 206734 12699121 ~ 12726556 (-)
XLOC_020969 CR847870.5 non-coding downstream 348336 12584839 ~ 12584954 (-)
XLOC_020962 NA non-coding downstream 1234615 11697272 ~ 11698675 (-)
XLOC_020961 NA non-coding downstream 1258869 11672189 ~ 11674421 (-)
XLOC_020985 NA non-coding upstream 247152 13187861 ~ 13188332 (-)
XLOC_020986 NA non-coding upstream 260769 13201478 ~ 13244551 (-)

Expression


Co-expression Network