G118223


Basic Information

Item Value
gene id G118223
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18254431 ~ 18255774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU136134
AAtcaagaagagagaaacagagacagcagacagaaaatcacaaaaaacatcaagcaaACATAAGGAGGGTGGGGGGGCCGGGGGGGTAAGACAGAGTACAGGGACACATGGGCAGCAAGACATTAAGGAGTCCAGTAGGTCAGGAGTGGTAGTGAGTCCATTTATAGCCAGGAGGAAGGTGGACGGTTAGCAGGGTGTAAAGTGTgtatgtcagtggaggctgctgaggggaggacggctcataataatggctggaacagacaaatggaaaccaggtgtttaatgtatttgataccattccccgTATTCCGCTCCagacattaccacgagcctgtcctccccagttaaggtaccacctgtggtgtatgtgtgttggagctTCCAGAATCACTGCTGTCTGAGCTTCTTTAGGGATTCCACTGTGGATCAGTGTCCAGCATGTGAAGGGCGGCCAGCCTGACcagagcacgcacgcacgcacgcacacaaacaaacaaacaaacaaacaaacaaacaaacacacacactgtttctccctctttctctcttataCACACGCACAGGTCAGGGATGTACTAAGGTCATTCCTTTCAGACCAGTACAATAACAGGGCTGTCtaatgttagtgtgtgtgaatTACCATGACTCAGTCTGAGACTGCTCTCACTGacaagacacacagagacatgggaAACACACGTGCTTCCCCTGTGAGcttcacacactcaaacacatgaGAATAAAGAAGCCTGTCCAAAACGTTCAACTAATagtcggtcacacacacacacttcctctgtCAGTGTCTCTCTCTACACTCAGATATAGACCGGTGAGGTCTCACTACATTAACCGTACGTTGACTTTCCGACTGAGCTTACGTTCAGCACTGCCTTAAAGCCACCTCTCAGCACTGCCTTAAAGCCACCTCTCAGCACTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCGTTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCGTTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCACTGCCTTAAAGCCACCTCTCAGCGCTGCCTTAAAGCCACCTCTCAGCACTGCCTTAAAGCCACCTCTCAGCACTGCCTTAAAGCCACCTCTCAGCACTGCCAAGGCTGAAGAAAGAAAACTCATCAAgactatctcttctctctctctctctctctctctctctctc

Function

NR:

description
PREDICTED: keratin-associated protein 6-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136134 True 1344 lncRNA 0.50 1 18254431 18255774

Neighbor

gene id symbol gene type direction distance location
LOC110536448 NA coding upstream 160288 18090308 ~ 18094143 (+)
trim108 LOC106573777 coding upstream 167493 18076971 ~ 18086938 (+)
LOC110536431 LOC107573682 coding upstream 183199 18052505 ~ 18071232 (+)
LOC110536418 LOC106575022 coding upstream 206516 18016795 ~ 18047915 (+)
polr3c LOC106605790 coding upstream 722194 17523084 ~ 17532237 (+)
LOC110536617 NA coding downstream 21887 18277408 ~ 18278953 (+)
LOC110536604 LOC106574921 coding downstream 48712 18304486 ~ 18343804 (+)
LOC110534321 LOC105018956 coding downstream 93977 18349751 ~ 18433698 (+)
si:ch211-120k19.1 LOC106605747 coding downstream 181299 18437073 ~ 18439582 (+)
LOC110536674 rpl18 coding downstream 190306 18446080 ~ 18456914 (+)
G118222 NA non-coding upstream 2625 18251222 ~ 18251806 (+)
G118221 LOC106594169 non-coding upstream 3233 18249710 ~ 18251198 (+)
G118179 NA non-coding upstream 98917 18155275 ~ 18155514 (+)
G118161 NA non-coding upstream 126454 18127656 ~ 18127977 (+)
G118224 NA non-coding downstream 63 18255837 ~ 18257167 (+)
G118240 NA non-coding downstream 26203 18281977 ~ 18282188 (+)
G117735 NA other upstream 796409 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 832771 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1180730 17073201 ~ 17073701 (+)
G117704 NA other upstream 1203592 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1256070 16995630 ~ 16998361 (+)
LOC110536658 LOC106577300 other downstream 201584 18457284 ~ 18481741 (+)
G119153 LOC106605761 other downstream 378065 18633839 ~ 18636041 (+)
G119160 NA other downstream 414739 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 703362 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 1000812 19131905 ~ 19259074 (+)

Expression


Co-expression Network