G118224


Basic Information

Item Value
gene id G118224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18255837 ~ 18257167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU136136
ccttgttcttCCACTTGCTCTCCctcacatacctacagtatatagccttATGACCATGCTCCCTACTAAGCTTGCAATAAAGAGGCCAGGGTCCAAATGGAGCACAGGGTGTtgtgttggtgtctgtgtgaTTCAGCTAGTAGGATATATATCAGTAGAAGGGTTCATATTATTATAGCACCATCAATAAATCGTTTATTCAAGTCATTCCACCAATATCTCCAGTTGGTGTTACAAAAagaaatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgtagggaGCAATGAGCCCATCTGTGCAAATGCAACATTATTATAGATTAATAAACAGTTTATACAGCTCATAAACAAAAGTGTCAACAACAATCTCCAGTTACAGCgttacaaaaataaaactgtaatagatagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgttatgCTGCAGTTAAAACAGCGTGCTCTACATACATAATGCATGTATCACTGCCACTAGGCCCGCCTCCACTGTGCAGCGAAGCTGTCAATCAGCATAAGGACACTGCCAATCAAACCACAGGAGATTGGTTGCACCATAATTAGGGAGGAGCAaaatgaggggaggggaggagatggaggggaggagggatggagcaaaatgagtagaatgatatcaaatacatcaaacacctggtttgatgccattccattcactccgttccagacattattatgagcctgtcctcccctctGCAGCCTCCACTGAATCAAACCCTAAAGGGAAGTGACAGACTCTCTCCATTCCATGTTTTATGTTAAAGGTGGAGAAGGATACATTTGCCCCAGACACTGAGGTCAGATTAGCCTATTTCCCTCATAATACACAGGGATTCTGAGGTCAGATTAGCCTATTTCCCTCATAATACACAGGGATTCCGGACACCAGTTTGTCACAAAGCACGACTTCCTGACACATTACAACGGCACGTTGTATGACATGGTTGGGCTGTCCTTCCTCGCATCCATGTCAAGGGTTAAAGGTCAGTGGTCATCGGCAGATGTTCCGGGTGCTCTCCCAGGCCTTGCTGCCCCTACGGAGTGGTaggaagaagggatggaggagggcggaggagagagagaggcgtttGGAGGGCTCGTACTCCAGCATCTTCTCCAACAGGTCAAAGAACTGATGATGCTCCTTAGCTTCTGATAACCGGTATCtc
>TU136137
ccttgttcttCCACTTGCTCTCCctcacatacctacagtatatagccttATGACCATGCTCCCTACTAAGCTTGCAATAAAGAGGCCAGGGTCCAAATGGAGCACAGGGTGTtgtgttggtgtctgtgtgaTTCAGCTAGTAGGATATATATCAGTAGAAGGGTTCATATTATTATAGCACCATCAATAAATCGTTTATTCAAGTCATTCCACCAATATCTCCAGTTGGTGTTACAAAAagaaatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgtagggaGCAATGAGCCCATCTGTGCAAATGCAACATTATTATAGATTAATAAACAGTTTATACAGCTCATAAACAAAAGTGTCAACAACAATCTCCAGTTACAGCgttacaaaaataaaactgtaatagatagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgttatgCTGCAGTTAAAACAGCGTGCTCTACATACATAATGCATGTATCACTGCCACTAGGCCCGCCTCCACTGTGCAGCGAAGCTGTCAATCAGCATAAGGACACTGCCAATCAAACCACAGGAGATTGGTTGCACCATAATTAGGGAGGAGCAaaatgaggggaggggaggagatggaggggaggagggatggagcaaaatgagtagaatgatatcaaatacatcaaacacctggtttgatgccattccattcactccgttccagacattattatgagcctgtcctcccctctGCAGCCTCCACTGAATCAAACCCTAAAGGGAAGTGACAGACTCTCTCCATTCCATGTTTTATGTTAAAGGTGGAGAAGGATACATTTGCCCCAGACACTGAGGTCAGATTAGCCTATTTCCCTCATAATACACAGGGATTCTGAGGTCAGATTAGCCTATTTCCCTCATAATACACAGGGATTCCGGACACCAGTTTGTCACAAAGCACGACTTCCTGACACATTACAACGGCACGTTGTATGACATGGTTGGGCTGTCCTTCCTCGCATCCATGTCAAGGGTTAAAGGTCAGTGGTCATCGGCAGATGTTCCGGGTGCTCTCCCAGGCCTTGCTGCCCCTACGGAGTGGTaggaagaagggatggaggagggcggaggagagagagaggcgtttGGAGGGCTCGTACTCCAGCATCTTCTCCAACAGGTCAAAGAACTGATGATGCTCCTTAGCTTCTGATAACCGGTATCtc

Function

NR:

description
PREDICTED: dual specificity protein kinase CLK2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136136 False 1288 lncRNA 0.46 2 18255837 18257167
TU136137 True 1288 lncRNA 0.46 2 18255837 18257167

Neighbor

gene id symbol gene type direction distance location
LOC110536448 NA coding upstream 161694 18090308 ~ 18094143 (+)
trim108 LOC106573777 coding upstream 168899 18076971 ~ 18086938 (+)
LOC110536431 LOC107573682 coding upstream 184605 18052505 ~ 18071232 (+)
LOC110536418 LOC106575022 coding upstream 207922 18016795 ~ 18047915 (+)
polr3c LOC106605790 coding upstream 723600 17523084 ~ 17532237 (+)
LOC110536617 NA coding downstream 20494 18277408 ~ 18278953 (+)
LOC110536604 LOC106574921 coding downstream 47319 18304486 ~ 18343804 (+)
LOC110534321 LOC105018956 coding downstream 92584 18349751 ~ 18433698 (+)
si:ch211-120k19.1 LOC106605747 coding downstream 179906 18437073 ~ 18439582 (+)
LOC110536674 rpl18 coding downstream 188913 18446080 ~ 18456914 (+)
G118223 NA non-coding upstream 63 18254431 ~ 18255774 (+)
G118222 NA non-coding upstream 4031 18251222 ~ 18251806 (+)
G118221 LOC106594169 non-coding upstream 4639 18249710 ~ 18251198 (+)
G118179 NA non-coding upstream 100323 18155275 ~ 18155514 (+)
G118161 NA non-coding upstream 127860 18127656 ~ 18127977 (+)
G118240 NA non-coding downstream 24810 18281977 ~ 18282188 (+)
LOC110536658 LOC106577300 non-coding downstream 220135 18457284 ~ 18481741 (+)
G117735 NA other upstream 797815 17455765 ~ 17458022 (+)
LOC110520798 fam189b other upstream 834177 17395343 ~ 17421816 (+)
G117714 LOC106605886 other upstream 1182136 17073201 ~ 17073701 (+)
G117704 NA other upstream 1204998 17050132 ~ 17050839 (+)
LOC110536275 s10i other upstream 1257476 16995630 ~ 16998361 (+)
G119153 LOC106605761 other downstream 376672 18633839 ~ 18636041 (+)
G119160 NA other downstream 413346 18670513 ~ 18672320 (+)
G119245 stl2 other downstream 701969 18934673 ~ 18992769 (+)
LOC110503718 LOC102193556 other downstream 999419 19131905 ~ 19259074 (+)

Expression


Co-expression Network