XLOC_002098


Basic Information

Item Value
gene id XLOC_002098
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22134533 ~ 22139340 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004088
GCATCCTTTGACTGTAAGAGACAGAGAACACCAATCCGGTCATTACCGAGGGATGCTGGTCAAGAGCAGTTCAATTCTGCAGTTTTCCGCTTGAATAGCGAAGTGGAATGAAACACGAGCTCATCGCACAGACAAAGGCAAACTGCTAACATTGGGCAAACTGAATACcggataaataaaataactgttctaGCCTCGCTCAGTCCGCCTGGTCGTCCTCTACTCTTCTGGATGCTGTACTGTTGCGGCGGCAGAGAGAAGGGGGAGCGGGAGCACACGGGCGCGGAAGAGGCGTTGATGAGCACCGGGGAAACGGACACCGTCACCGCTGGAAAAAGGGAAGAAAGTCCTGCGTCGGGGATGTTTGATACAACGGATATGCCCGAGCTCCTGCCGCCCTCCGAGCAACTTCAATCGGAAACTCGTGACTCGGAGTGCGGGATGCAGCATTTGCGGGTTGAGGTCAACAGTGACTGCTTGAGCCCCGAATCTCCTCAGAGGAGGTTAGGCCAGAGGGCCCCCAAACTCGGACAGATTGGACGTTCAAAGAGAGTGGTTATAGAGGATGAAGATCTGGATGATAtcatgaacaacaacaacaacaacaacaacaacaatggacAACTGCCAGTCCCTCTCAGCAGTGAACCATCCTGAGCTTCCAGATTCGTAATATTCTGGACCAGCTATTCATGAAATGCGCCCTTCTGCCATGAGACAGTTGGGACACTTTCAGCAGGAGAAAAGACAGACACCTCTCTCCCAGTATCAGATTCACACGAGATACGCATGCGTTTCAGCTGTAGTTTACTAGTCGCATGGCAGCAGCTGTCGGTCTACAACAGGCCACACAGGTGATTTGTTGCATAGCTTTTTAGATCAgagctctctctgtgtgtgtctgtgtgtaacaCCTGTGCCTCCTAGAGGAAGAAATGTGCATTTGTTGGCTGAGTAACATATTTCTGACCAAAGGCGAAGACCGGCCACTGTTAATCACCTTGTCTAGCACTGTGCTGTTATAAAGATGCAAGTctttcattttagtttaatttatttaaagaactGATGGGAAGAATTACACAAAGTTCTAGCATTTGTAATTTTCTGTAGTTTCCAACTTTTTGTCCTACAGTATATTCAAGTCCACCATGTTTCAGGGTTCACAATTCCCTTAGCCAAAAATCAAATTTCCTTTCACTGActactgactaaaaatattaatttgacctataattaaaaaaaaaaaaaaaaaaaattattggttttaatgaacatacaaacgtaaacaaaaaagggcaaagacaAATGTATCAGTAGACAAGTATAGCAGCAAaaggcaaagagaaaaaaaatcaataattaaataaataaaaaagtaataataataaagaaataaataaacatacaaacaaaatacaaaaaacataataCACAAAGTTATGCCGTGGTTAAGGTCACACATATAGTAAAAAATACATCAGATGTGTTCGTAGAGTTAGAGGATCATTAGAGGCATCCATATTTTTTGAAAGGCACCCcctttgttttttaagtattatGTATATTGTTCCAAGAGCATTGTTTCATTCAAGAGTTTTATGAACAGTTCAATTGTTGGAGGTCTTTGTTGGTTCCAGTTGAgcaaaatgcatttttgctaGATAGGAGATGATGCCGAGTCTCTTTATAGAAATGGGATCAAGTGTCTTGTTCAGTACTGTACCAAAGAGGTATAGTGTTGGTGTGTTGTCCAATGGAACTTGCAAAGCTTTGGCTATAAAGTCCTGTACTGCTTtccagaaaaaaattagctttttgCATTTCCAAAAAACATGCATAATTGATCCTGAATAGGTTTTACATCTGTGACACCTGGATGATACATTAGGGTACATTTTGCTCAAACGAAGTGGGGTCAGATACATCCTATTTATAAATTTATCATTTTGTTCAATTATTCTGTTATTGGAAAGGGAATGAGAGTATTCTGGCATATAGCCTCCCACTGATCGTCATTAAAATTAGATCCCAAATCTCTTTGCCACACGTTTTGTGATCCCAGTGAATTTGACCTATAActaatgaaaaacaaatcaagGTGACTTTGtgcttgtaataaaaaaaaaaagttttagtttaaatattaaagttgTCATTTTAGCCAAAATTCTTAAAATGTACACTTTCCTGGCATGTTTGCTTTAGTTTATATGTACCGCTTAGgaatgggacgataactgtttttaaggtatactgCGATTAGGAAAAGGCAAGGTTTTAAAAGCGCCAAAACTTTCCAATTGTAtgtggatgcagcctttatgatgcaagctgaaatTGCATCATATCTCCATCAGAAAAGATATGCAAACATGCTGctttaaattgtgaagaaatcagtgtttttgaaactaatgtagACAGCTgaagtcaattattcattttcattatttagcctgacatgtttactgcttcaaaatattttaaatgtttctcaaaacaaaatattttgtgttcaatggggaaaaaagttGAAGTTTTTTTCAGggtgtccacggggtcttaaaaagtcttaaatttcctAAACTAAATATAagaccttaaaatgtattaaattcactgaaatatgctGCTGTGggtcttaaatacttttaaacaggtcttaattttcacTAATTGTCCCACTaattgtccatgtaaagctatagCCAATGGGTacaaagtttaataaaatttaacattt

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:1901681 sulfur compound binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004088 True 2746 lncRNA 0.38 2 22134533 22139340

Neighbor

gene id symbol gene type direction distance location
XLOC_002097 npm1a coding upstream 89414 22034477 ~ 22045119 (+)
XLOC_002096 kcnip1b coding upstream 102612 22003750 ~ 22031921 (+)
XLOC_002095 BX005027.1 coding upstream 153868 21980547 ~ 21980665 (+)
XLOC_002094 NA coding upstream 185125 21936278 ~ 21949408 (+)
XLOC_002093 NA coding upstream 189189 21917877 ~ 21945344 (+)
XLOC_002099 NA coding downstream 84863 22224203 ~ 22263265 (+)
XLOC_002100 NA coding downstream 114004 22253344 ~ 22273862 (+)
XLOC_002101 NA coding downstream 136573 22275913 ~ 22279448 (+)
XLOC_002102 NA coding downstream 233961 22373301 ~ 22377028 (+)
XLOC_002103 nlgn2b coding downstream 242462 22381802 ~ 22478129 (+)
XLOC_002092 NA non-coding upstream 190448 21914635 ~ 21944085 (+)
XLOC_002091 NA non-coding upstream 228156 21906152 ~ 21906377 (+)
XLOC_002106 NA non-coding downstream 480990 22620330 ~ 22621291 (+)

Expression


Co-expression Network