XLOC_020980


Basic Information

Item Value
gene id XLOC_020980
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12949820 ~ 12950292 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042355
TTATTCTGTTTATATTTACAGTGTTCACAGGAGAAAATACATGAGGATGAACAGAAATGATGGAATATGTCATAAACTGGAAGGTATGGCAAAGATGATGAATTATTTGCAGTACTTGGAGGACATAAGTCACGGGCTTCTGGACATTAACACTCGACTGCACCGATTCGTCAACCTCATCCTGGGGACATTtgagtgtgtgttgtgcagtCGTCCGGTCTTTAATATGAGCTAACATGGCGTTCGATAAAGACACACTTCATTGGTTTGAACAAGGTAATATTTGAGACAATTACCCACAGAATACTTATTAGGGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042355 True 318 lncRNA 0.39 2 12949820 12950292

Neighbor

gene id symbol gene type direction distance location
XLOC_020979 NA coding downstream 9111 12933290 ~ 12940709 (-)
XLOC_020978 mfsd6a coding downstream 24079 12911236 ~ 12925741 (-)
XLOC_020977 nab1a coding downstream 58899 12870275 ~ 12890921 (-)
XLOC_020976 glsa coding downstream 87405 12831675 ~ 12862415 (-)
XLOC_020975 NA coding downstream 163379 12777889 ~ 12786441 (-)
XLOC_020981 NA coding upstream 7930 12958222 ~ 12964877 (-)
XLOC_020982 ahr1b coding upstream 28921 12979213 ~ 13042992 (-)
XLOC_020983 ahr2 coding upstream 95978 13046270 ~ 13165186 (-)
XLOC_020984 BX908726.1 coding upstream 151444 13101736 ~ 13112322 (-)
XLOC_020985 NA coding upstream 237569 13187861 ~ 13188332 (-)
XLOC_020972 CR847870.3 non-coding downstream 223264 12699121 ~ 12726556 (-)
XLOC_020969 CR847870.5 non-coding downstream 364866 12584839 ~ 12584954 (-)
XLOC_020962 NA non-coding downstream 1251145 11697272 ~ 11698675 (-)
XLOC_020986 NA non-coding upstream 251186 13201478 ~ 13244551 (-)
XLOC_020988 CU062647.1 non-coding upstream 472276 13422568 ~ 13431304 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G150488 NA non-coding NC_056720.1 CM032089.1 6886549 ~ 6887136 (-)