G119079 (rpl18)


Basic Information

Item Value
gene id G119079
gene name rpl18
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18446152 ~ 18456914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU137299
GCAGGTTAAACCAGGTGTTAGTGCTAGAGCAAAAGCCTGACCCAAACAAGCATCTAGTAAGTTAAAACAACCTTTACCTTGAGCTTGGGGATATCCTGAATTCTGACATCATCAGTGACAGTTCCCACGACAACTGCGGTTCTGTTCTCACGTCCAGGAAGTTTCATCTTACGGATCATGCGGGACACTGATATCGGAGGCCTGTGGGTCCTGCTCATGAAGAGCCTCCTGAGGACCACCTTGTTGAAGGGAGCAGTGGAGCGACGGGCCAGGAATCTGTAAAGCTTGACCAGGAGCCTCAGGTAGATATCCTGACTCTTGGGCTCCTTTCTGTGCACCTTACGGTCCTTGTTGTGTCGGATGTCAACTCCCATCTTGGACTCAGAGTGGAAAGGGAAAAGGAAGAGTCGCTGTCTC
>TU137301
atgaagatcaaaggtaagtgaatatttataatgccatttttgactaatgttgactgcgcaacatggcggatatttcttttgACTGTTTTTGGGCTCTGAGtgccgaacaaaacatacatgtattgtgtaacatgaagtcatatgagtgtcatctgatgaagatcaaaggttagtgattaattttctctctatttgtgctttttgtgactcctctttggctggaaaaatggctgggtttttctgtgacttggtggtgacctaacaatcgtttatGGAGCTTTCGctttaaagcatttttgaaaccagacactgtggctggattaatgagaattttatctttaaaatggtgcctaatacttgtatgtttgagaaattggATTTATGAGAGTtgtgttgatttgtatttggcgccctgcaatttcattggctgttggcgaggggttccacTAGTGGAACCAGGTTAACATCATCCCTAATGAGCTATAGGACCCTTGGTATCGTACAGCTGGGATTTGACAGTGTTAGTATGATACCATCAGCGTTTAAGTTGGTTTTGAAGTCATGACCACTCAGTGATTCCACTTATATCCCCCTTAGCCTGTTTTAATGCGGTCATCTCGTTGTAAGATTGTTTAAAAATCCTTTGCTCATTTGTAACAATAAAGACATTTGCAACTTtatatttgtagtcaactttgttctgaagttatctGCGGTCAGAAACATCTAGATTCCATGTTTAGCTGGAGATTGTGTGTATAAAGTGACGCAGATGGGCAAAAAAAAAGCATCCAACAACGGCCACTGTAAATAACGAGCAGTTTCAAGCCCAATTTTAGTAACGACGGTTTTGGGTCTTAAGATGCATTTGGGAAACTGGGCCATTAGATTTAAATCATTTAGCAGATGATGTTATTCAGACACTTAGAGGAGAAATAAGTGCATGACAGACTTTTCACCTAGTGGGCTTGGAACCAGCGACTTTTCGGTtaatggcccaatgctcttaaattactaggctgcctgccacccCAACTGGGACATGTTCAAGAAGCCACGTAAGAGGTGGAAAGATCTCCAGCTCACTGAAAAGGTACCAAATCATCAGAAAGGAAATTAACCATGACATAGGAGTCAATGGTCAAAAGAGAATCATAACTAGAATGTTTGAGCAAGGaagtgtaaaaaaacaaaacaataaagcatTGTAGCGCAACAGGCATAAGCAGGAGTACCAGCTGAAGTTGTCCTCCCACttgtactgttgccctcttaggTCTTTGAATCTGTGACTTTGACTGCCATTCAATTGAGTTGATTGTAGCAATTTGATTCTGTAGTAGGTTAAAAACACAGCAAAGGGACAGATTGATGAAACTCACCATGCGGGACACTGATATCGGAGGCCTGTGGGTCCTGCTCATGAAGAGCCTCCTGAGGACCACCTTGTTGAAGGGAGCAGTGGAGCGACGGGCCAGGAATCTGTAAAGCTTGACCAGGAGCCTCAGGTAGATATCCTGACTCTTGGGCTCCTTTCTGTGCACCTTACGGTCCTTGTTGTGTCGGATGTCAACTCCCATCTTGGACTCAGAGTGGAAAGGGAAAAGGAAGAGTCGCTGTCTC
>TU137302
AAATCTCATTTACCAGTTTTGAAATACTAAATTCTAACAATTCAATCCGATTGCTGTTTTTTAACACTGGGCTCAGGGGCTAATTCAGTCAGGTGCAACATATAGATTAGAACACTGCAGACAAACTGACAATTGTTTCTACATGACAAGAGAAACATGGTTGTCCTTCTCTACACAATGCACATCTAGTATCCTCATTCTAAGGGCTCTCCACAACAAGCTCCTGTACTAACAAAACATCTTATCGAAGTTCTCAATATTCAGAAAGTGTCCTCCGTTTAAAAACATTGGTGATTTTCAGTGAAAACAAAACTGGAACGAACTTGTCAAACAATTTGGAAAAAATTATCTAAATTGATAGATATTGAATGAAACCCTAGGAGAGCAGCAATCTCATAAAAGGGGTACAATACTCACTTGGTGTGACTGTGGGGGGTTCCACAGGCTTTTCCAAAATGCCTGTACACCTCTCTGCCCTTGCGGGGTCCTGACAGCAGCACGGTGCCCTGTCCTTTGGGGGCAGCCAGAGCCAGCTGGTCAAAGGTCATGACCTGGCCTCCGGCCTTCAGGATCCTGCGGCGAGCGCCATCAGTCACCTTCAGAGCGCACACCTGAGCTTGGGGATATCCTGAATTCTGACATCATCAGTGACAGTTCCCACGACAACTGCGGTTCTGTTCTCACGTCCAGGAAGTTTCATCTTACGGATCATGCGGGACACTGATATCGGAGGCCTGTGGGTCCTGCTCATGAAGAGCCTCCTGAGGACCACCTTGTTGAAGGGAGCAGTGGAGCGACGGGCCAGGAATCTGTAAACTTGACCAGGAGCCTCAGGTAGATATCCTGACTCTTGGGCTCCTTTCTGTGCACCTTACGGTCCTTGTTGTGTCGGATGTCAACTCCCTGTGAATAGATGGTGCAGGTAAA
>TU137297
CTTAACTTAGGTAGATTTAGGTTAGCAGTATAGTTAAGGTTAGATttaagagaaattgtagaaataggcatgGTTTAGCAATAATCTGACCGTGGCGGTGATAACAGTAACAGGACTGTAGAGCAAAGGTACAACAGAATATCCCCAGCATAACTTTAAACTTTGAACATTGTTAAACTAGTAGTGTTCTTACCTGACAGCAGCACGGTGCCCTGTCCTTTGGGGGCAGCCAGAGCCAGCTGGTCAAAGGTCATGACCTGGCCTCCGGCCTTCAGGATCCTGCGGCGAGCGCCATCAGTCACCTTCAGAGCGCACCTTGAGCTTGGGGATATCCTGAATTCTGACATCATCAGTGACAGTTCCCACGACAACTGCGGTTCTGTTCTCACGTCCAGGAAGTTTCATCTTACGGATCTGAAAAGGACGGCAAATAGTTCAGAAGAGGGACAACCGCCACACAGTAAAGATAAATACTAAGATGCTTTCACTTAGCTGTGTATTCATATCAATAAATCTGGAAGGACATTG
>TU137298
TTCATTTTGTATTGCTCTTTTTATTTGTATCAGATTCCATGGAAAACAAAAAATACTTTAGGCCTTGTATCCACGGCTGGATCTGCGCCCACGAGCACGTTCAAACTTCCTGCCCTTGGAGCGAATGTAGGgcTTGGTGTGACTGTGGGGGGTTCCACAGGCTTTTCCAAAATGCCTGTACACCTCTCTGCCCTTGCGGGGTCCTGACAGCAGCACGGTGCCCTGTCCTTTGGGGGCAGCCAGAGCCAGCTGGTCAAAGGTCATGACCTGGCCTCCGGCCTTCAGGATCCTGCGGCGAGCGCCATCAGTCACCTTCAGAGCGCACACCTTGAGCTTGGGGATATCCTGAATTCTGACATCATCAGTGACAGTTCCCACGACAACTGCGGTTCTGTTCTCACGTCCAGGAAGTTTCATCTTACGGATCTGAAAAGGACGGCAAATAGTTCAGAAGAGGGACAACCGCCACACAGTAAAGATAAATACTAAGATGCTTTCACTTAGCTGTGTATTCATATCAATAAATCTGGAAGGACATTG

Function

symbol description
rpl18 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome and rough endoplasmic reticulum. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 18. Orthologous to human RPL18 (ribosomal protein L18).

NR:

description
60S ribosomal protein L18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137299 False 417 lncRNA 0.34 4 18446152 18454338
TU137301 False 1623 lncRNA 0.34 3 18446152 18448710
TU137302 False 927 lncRNA 0.47 5 18446900 18455513
TU137297 False 528 lncRNA 0.35 2 18454049 18454908
TU137298 True 540 lncRNA 0.34 4 18454049 18456914

Neighbor

gene id symbol gene type direction distance location
LOC110536509 LOC106593149 coding downstream 153376 18288741 ~ 18292776 (-)
khdc4 LOC106573819 coding downstream 168558 18268546 ~ 18277594 (-)
LOC110536568 LOC106573533 coding downstream 180366 18256000 ~ 18265786 (-)
LOC118938207 LOC106594169 coding downstream 195470 18249720 ~ 18250682 (-)
LOC110534298 cyp11b coding downstream 197410 18224491 ~ 18248742 (-)
LOC110536706 LOC106577267 coding upstream 42885 18496988 ~ 18516011 (-)
LOC110536756 ndufa3 coding upstream 84136 18541050 ~ 18543176 (-)
LOC110536762 prpf31 coding upstream 102879 18559793 ~ 18564193 (-)
LOC110536757 lmtk3 coding upstream 107689 18564603 ~ 18586875 (-)
LOC110536773 LOC106577219 coding upstream 130105 18587019 ~ 18590352 (-)
G119000 NA non-coding downstream 12484 18427562 ~ 18433668 (-)
G118983 NA non-coding downstream 47730 18396615 ~ 18398422 (-)
G118916 NA non-coding downstream 96902 18349030 ~ 18349250 (-)
G118915 NA non-coding downstream 97405 18344208 ~ 18348747 (-)
G118892 NA non-coding downstream 157573 18288374 ~ 18288579 (-)
G119085 NA non-coding upstream 9388 18466302 ~ 18469012 (-)
G119089 NA non-coding upstream 26229 18483143 ~ 18483692 (-)
G119090 NA non-coding upstream 27731 18484645 ~ 18484854 (-)
G119100 NA non-coding upstream 36362 18493276 ~ 18494523 (-)
LOC110534274 LOC105018985 other downstream 281039 18157725 ~ 18188504 (-)
LOC110536462 LOC108436080 other downstream 293366 18127347 ~ 18153075 (-)
LOC110536375 LOC106575046 other downstream 442856 17999431 ~ 18009077 (-)
G119087 LOC106605728 other upstream 19540 18476454 ~ 18476753 (-)
LOC110534340 LOC106605761 other upstream 180967 18627912 ~ 18646884 (-)
G119512 LOC105019016 other upstream 342586 18799500 ~ 18801387 (-)
G119663 NA other upstream 591393 19048307 ~ 19049030 (-)

Expression


Co-expression Network