G119085


Basic Information

Item Value
gene id G119085
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18466302 ~ 18469012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU137313
cggtgtgtgttacctgtctgtatcaggttGTAGAGCTGACATTAcggtgtgttttacctgtctgtatcaggttGCAGAGCTGACGTTACGGTAtgttacctgtctgtatcaggttGTAGCTGATGTtacggtgtgtgttacctgtctgtatcaggttGTAGCTGACGTTACGGTGTGTGTTATCTGTCTGTATCAGGTTGTAGCTGACGTtacggtgtgtgttacctgtctgtatcaggttGTAGCTGACATtatggtgtgtgttacctgtctgtatcaggCTGTAGCTGACGTtatggtgtgtgttacctgtctgtatcaggttGTAGCTGATGTTAGCCTCTCTGATCATTGGCAGGATGTGTGTCTGACACCACTGCATAGCCTGGCCTCTCCCACTGAAGGGGTTCACCAATAGCAGCAGCCTTCGAGGACGGGGCAGTAAACGTTTGACAATTTCTGAGGGAAAGCAGCCAATCATTAGAAACAAATTGATTGATTGTTCTATCAAAAATACAAGGCTTCATCTTCACAGTGTACAAGAGAACAACAAACGTACGTGATGCCAtaaagcagggtttcccaCCCTTAGACTTTGAGTGTATCTGTGACAAGGCAAACCTCTTTCAGCTCATCTCAAAGGGACTATCTCTGACCAGATAAGTAATAATGATTCCATTTGactaatggctctatataattaCATCTTGTAGAATGAAAAGGCCCTAAAGGCCCAGGACAGGAAACAAGGTACTAACTGAACACGTCAGTGTTTAGTCTTCCACAAAACACCTGGTAATAACAAGCAGAGCCCTATCTACACAGCAGCACCTACTGTATAGGGTTGAAGTGGACCAAACACTAACTGCACACATCTCTGACTAAAGCCATTATAGAAGCAGAACCAGCAGCTAGGAGGTTGTCTAATTCACAATGCAGAGGAGAGCAACAGACTAGACAGAGTACAAGGAGttagagagataaggagagagagagataagagaggagacagagttaCAGACATACAGAGTGGAGAAAGAgttagacagggagagagtagaCAGAGTTACAGACATACAGAGTGGAGACAGAGTTACAGACATACAGAGTGGAGACAGACTTACAGACATACAGAGTGGAGAAAgcgttagacagagagagagtagacagagTTACAGACATACAGAGTGgagaaagagttagagagagagtagacagagTTACAGACATACAGAGTGGAGAaagagttagacagagagagagtagacaaagttagacagacatacagagtgGAGACAgttacagacagagtgtgtgataaatagagcaggagagtgagagagagcaggagagagagcaagagagagcgagcaggagagaggggacagagtgAGAAAGGGGTAGTAACTGtgaaaggagaaagagggaggacaTTGAAAGAGGAAGATAAAGAAATGCAGACAGTAGGAAGGAAGGAGGTACAAAACAAAAGAGGACAGAGGGCAGATAGATGgatgagaggagacaggaggaggagagactgaaAAAGGTGTAAAGACAGCAAGGATGAAAGACTATGGGGGGAGGatgcacagacagacactgagggTGTAGACTAATgcacagagacagtgagaaaaGAAGAGTGtttgggagagaggaaggagacaagacagagagagataatgagcGAGGGAGAGTCAAAACAAATGTAAGAAAAGGGAATGTTGAAATGGATAATAGATGGGCTTTACGTAGGCTTTACGCCTTGGGGTTCTTCCAGGTCCTCAAAGTGGTCCTCAAAGTGCTAAAACAAGACAGCGATGTGAGAAAGGCTGACGATGGAAAAAGCAAAAAGGAGAGTgcaagacagagggacagagagagaaagaaggagagcatatactgtatatagatagaAAGGACCACACAGGCCGTGGCGAAAACAGTGGTGTTGCTATTTGGGCAGAACGGGAGTTAGTGGGAAGGGAGGGAAGCCGTGTTAGTGAGGGGTGGGAGTtagtgggaagagagggaggcagtgtTGGTGAGGGGTGGGAGTtagtgggaagagagggaggccgTGTTGGTGAGGGGTGGGAGTtagtgggaagagagggaggccgTGTTGGTGAGGGGTGGGAGTGAGAAGAGAAGGAGGCCGTGTTGGTGAGGGGTGGgagtgagaagagagggaggcCGTGTTGGTGAGGGGTGGgagtgagaagagagggaggcCGTGTTGGTGAGGGGTGGGAGTTagttggaagggagggaggcCGTGTTGGTGAGGGGTGGGAGTTAGTGGGAAGGGAGGCTGTCTTGGTGAGGGGTGGGAGTTAGTGGGAAGGGAGGCTGTCTTGGTGAGGGGTGGGAGTTagttggaagggagggaggatgtcTTGTTGAGGGGTGGGAGTTagttggaagggagggaggctgtGTTGGTGAGGGGTGGGAGTTagttggaagggagggaggctgtGTTGGTGAGGGGTGGGAGTTagttggaagggagggaggctgtGTTGGTGAGGGGTGGGAGTTagttggaagggagggaggctgtG

Function

NR:

description
PREDICTED: sphingosine kinase 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137313 True 2570 lncRNA 0.48 2 18466302 18469012

Neighbor

gene id symbol gene type direction distance location
LOC110536509 LOC106593149 coding downstream 173526 18288741 ~ 18292776 (-)
khdc4 LOC106573819 coding downstream 188708 18268546 ~ 18277594 (-)
LOC110536568 LOC106573533 coding downstream 200516 18256000 ~ 18265786 (-)
LOC118938207 LOC106594169 coding downstream 215620 18249720 ~ 18250682 (-)
LOC110534298 cyp11b coding downstream 217560 18224491 ~ 18248742 (-)
LOC110536706 LOC106577267 coding upstream 30787 18496988 ~ 18516011 (-)
LOC110536756 ndufa3 coding upstream 72038 18541050 ~ 18543176 (-)
LOC110536762 prpf31 coding upstream 90781 18559793 ~ 18564193 (-)
LOC110536757 lmtk3 coding upstream 95591 18564603 ~ 18586875 (-)
LOC110536773 LOC106577219 coding upstream 118007 18587019 ~ 18590352 (-)
G119079 rpl18 non-coding downstream 9388 18446152 ~ 18456914 (-)
G119000 NA non-coding downstream 32634 18427562 ~ 18433668 (-)
G118983 NA non-coding downstream 67880 18396615 ~ 18398422 (-)
G118916 NA non-coding downstream 117052 18349030 ~ 18349250 (-)
G118915 NA non-coding downstream 117555 18344208 ~ 18348747 (-)
G119089 NA non-coding upstream 14131 18483143 ~ 18483692 (-)
G119090 NA non-coding upstream 15633 18484645 ~ 18484854 (-)
G119100 NA non-coding upstream 24264 18493276 ~ 18494523 (-)
G119126 NA non-coding upstream 67000 18536012 ~ 18538646 (-)
LOC110534274 LOC105018985 other downstream 301189 18157725 ~ 18188504 (-)
LOC110536462 LOC108436080 other downstream 313516 18127347 ~ 18153075 (-)
LOC110536375 LOC106575046 other downstream 463006 17999431 ~ 18009077 (-)
G119087 LOC106605728 other upstream 7442 18476454 ~ 18476753 (-)
LOC110534340 LOC106605761 other upstream 168869 18627912 ~ 18646884 (-)
G119512 LOC105019016 other upstream 330488 18799500 ~ 18801387 (-)
G119663 NA other upstream 579295 19048307 ~ 19049030 (-)

Expression


Co-expression Network