G119741


Basic Information

Item Value
gene id G119741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19260245 ~ 19262206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU138159
ATATCTAAGTTAAATCACAGTATAACATGGTACATTCTCAAAAACATagtatatattaatatattcTTTAATTCTCAGCAAAAAATGTAGCTACAAGGTTTTAAAAGTCACTTCTGTTCATGCAGTCACAGACTTTAGTATTAGCGCCTTGATACAACTCAATGATGCTCGATGACAACAGGCTTCAGCACTCCTGATTGGTTTAAAATGACCTCATTCCAAACAGTAGAACTGTTTCCACGGTTTCCACTGTTGGGGCGCTGGGACGAGCGAGCTACCTCAAGGAAAGATGGCCGCCCTGGGTCCTAAGCTTTAACTAGAGTACAACTACACAAACCCCTCCAATGCAAGCCTCTGGGATTTCAATCGTCTAAACATGCAATGATTTCTGGGCTTTTCCAAGGTGTAAGGGGGCAGAAGGATCATGGGGACGACAAaacatctctctataactatGTTACATTGTTTCCAAAATATGGCCGGCCCCTTGACAAAGCAGTATGTGCAGTAGAGAAAAGTAACTCAAAAGACCGTCCAACCTTTTGATCTGTGACAACATGCACAAACCCAACTCAACGACATAGTCCCTCACATTGCAGGATCAAGCACCATCAAGTCCTCCATTCCAGCCAGGATCAACAGCATCCCAAAAAAGGTTACAAAGTCTAAAAGTTCTACATCATGTCAAAGCTACATTCAACTAGGAGAAGCTGGGGGTTCGGCTGTGGGCTGGTCTCAGAGTGAGAGAGCTGAGGTGAATACGTCATACCCATGGAGAGCATGACGCTGCATGACACAGCTCTTTTAGATGACCCACACAGAGAAGCACCATGGCATGGTACGGACTATAGCTTTGGTTTAACAATGTATTTTGGCACTTTAATGCCAAATGCCAAATGTCTGTTTATTCTCTGTTTGACACCTGTTGAGTTGTTCATAAGGTGTAGCCTGAGCATGGTACTGTTCAGATGACCTGATCTGTAAATCACCTGCACTTACACACTACTAGTTCTTCACAGATCCGTATTGTGTAGAGATGAGTGGATCTGAGCAGTGCCTGGCCTAGGTCCACCCCGGGGAACAAGCCAACAGGCCTACAGGTTGTCACATAACTCAGCACTCCAAGTACTGTCAGTCTGCCATTGTATTATCATCACATTAAAGAGGGCAATATTGCTATTGATGACTTATTCCAGTCTTTTTTAATGACAGAACACAGTTAAATCTCTATGTCCCACATAGTAGACTCCACTCCCACATAGTATTCCCTCATAGTGGTATTACTACATCCGTCTTGCTGTGAAACTACATTTCTAATAATGACAGTAGTCAGGTATTGGCACAGTATTGTCCTTCACCATGGTATAATAACTATTGTGTGCTGTAATGACGGCACGTGGATGGCTTTTGGCTTTATGCGATGACCAATTGTGCTTCATAAGATGCATCTCCTTCACACTGGTGAGTGGGTCTTCCAAGCAGGAGGGAATGAAAGGCCATGAACACTATTTTCAAATACACTGCTCAGGGTTTCAATGACTCCTAACGACTAAAGCTAAGCTGTCCTGATTCCTCCACATAATAACGGAATGTTTTACATCTTCAATGTAATGTCAAATGGACTCAGCTCAGAGACTTTCTCACTCAGTCCTCTCAAGCTTATTTGAATATTATGCAGCCATCTAGTGCCAACTGTAGATATTGCAACCAATCatttcctccatcctctctcctaaTAGAGAATGTTGTATTGCTCACGTGTGAAATACTATAGGGATATACTCATGAAAACAGATGACTGGAAACCAATGTGCTTAAAAGCTGTGGAGTAGAAATTTGGCACTGCTTTTTAAAGGCTTCTCACGTCCAAGTTCAGCCCCAGCCGACCTCCCTGCTGCTTGAAATACTAACAGAACAACACATAGATAGATAGAATAacaaagaagaaggagaagaaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138159 True 1962 lncRNA 0.42 1 19260245 19262206

Neighbor

gene id symbol gene type direction distance location
LOC110508916 LOC106605783 coding downstream 182292 19062094 ~ 19077953 (-)
josd2 josd2 coding downstream 502449 18755291 ~ 18757796 (-)
LOC110536927 LOC106577129 coding downstream 551614 18695833 ~ 18708631 (-)
LOC110536908 LOC106605765 coding downstream 566425 18688948 ~ 18693820 (-)
grwd1 grwd1 coding downstream 587835 18662604 ~ 18672410 (-)
cacng6b LOC106606119 coding upstream 222122 19484328 ~ 19499142 (-)
u2af2a u2af2 coding upstream 244462 19506668 ~ 19513981 (-)
LOC110534365 LOC106576897 coding upstream 252073 19514279 ~ 19524832 (-)
LOC110537080 LOC106576890 coding upstream 265789 19527995 ~ 19548154 (-)
LOC110537104 LOC106605828 coding upstream 292712 19554918 ~ 19556242 (-)
G119740 NA non-coding downstream 2176 19257625 ~ 19258069 (-)
G119734 NA non-coding downstream 12778 19220671 ~ 19247467 (-)
G119735 NA non-coding downstream 46140 19207479 ~ 19214105 (-)
G119722 NA non-coding downstream 67161 19192860 ~ 19193084 (-)
G119708 LOC106591967 non-coding downstream 116190 19143701 ~ 19144055 (-)
G119742 NA non-coding upstream 1189 19263395 ~ 19267923 (-)
G119744 NA non-coding upstream 5895 19268101 ~ 19268303 (-)
G119747 NA non-coding upstream 10621 19272827 ~ 19280003 (-)
G119749 NA non-coding upstream 23418 19285624 ~ 19287713 (-)
G119752 NA non-coding upstream 29408 19291614 ~ 19291862 (-)
G119663 NA other downstream 211215 19048307 ~ 19049030 (-)
G119512 LOC105019016 other downstream 458858 18799500 ~ 18801387 (-)
LOC110534340 LOC106605761 other downstream 613582 18627912 ~ 18646884 (-)
LOC110536756 ndufa3 other downstream 717748 18541050 ~ 18543176 (-)
G119087 LOC106605728 other downstream 783492 18476454 ~ 18476753 (-)
LOC118944062 LOC106575151 other upstream 431483 19692971 ~ 19695564 (-)
LOC110537275 grl1 other upstream 661892 19924063 ~ 19928533 (-)
G121046 NA other upstream 948862 20211068 ~ 20212367 (-)
LOC110509624 ret1 other upstream 1200476 20462682 ~ 20465854 (-)

Expression


Co-expression Network