G119414


Basic Information

Item Value
gene id G119414
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19271405 ~ 19274795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU137748
CTCTCAAACAAACTACAgtaacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacaaaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctaaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaattctcaactctcaacccaactacagtcacacatcacacaccctccctcaactctcaacccaactacagtacacatcacacaccctgcctcaattctcaactctcaacccaactacagtcacacatcacacactctGCCTCAattctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaaacAAACTACAgtaacacatcacacaccctgcctcaactctcaacccaactacagacacacatcacaaaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaattctcaactctcaaccctactacagtcacacatcacacacactgcctcaactctcaatcaaactacagtcacacatcacacaccctccctcaactctcaacccagctacagtcacacatcacaaaccctgcctcaactctcaacccaactacagtacacatcacacaccctgcctcaactgtcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaactctcaacccaactacagtaacACATCACACagcctgcctcaactctcaagccaactacagtcacacatcacacaccctgcgtcaattctcaacccaactacagtcacacatcacacacactgcctcaactatcaacccaactacagtacacatcacacaccctgcctcaactctcaacctttaacccacctacagtcacacatcacactcTGCCTCAattctcaactctcaacccaactacagtacacatcacacaccctgcctcaactctcaacccaactacagtacacatcacacaccctgcctcaaatctcaacccaactacagtcaaacatcacacaccctgcctcaactcttaACTCTCAACCcagctacagtacacatcacacaccctgcctcacctctcaactctcaacccagctacagtcacacatcacacaccctgcctcaactctcaactctcaacccagctacagtacacatcacacaccctgcctcaactctcaactctcaacccagctacagtcacacatcacacagccTGCCtaaactctcaacccaactacagtcacacatcacacaccctccctcaactctcaacccaactacagtacacatcacacaccctgcctcaactgtcaacccaactacagtgacacaacacacaccctgccacaactctcaactctcaacccagcaacagtcacacatcacacaccctccctcgactctcaacccaactacagtacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccagcttcagtacacatcacacaccttgCCTCAACtgtcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaactctcaaaCAAACTACAgtaacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacaaaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctaaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacacaactacagtcacacatcacacacactgcctcaattctcaactctcaacccaactacagtcacacatcacacaccctccctcaactctcaacccaactacagtacacatcacacaccctgcctcaattctcaactctcaacccaactacagtcacacatcacacactctGCCTCAattctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaaacAAACTACAgtaacacatcacacaccctgcctcaactctcaacccaactacagacacacatcacaaaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaattctcaactctcaaccctactacagtcacacatcacacacactgcctcaactctcaatcaaactacagtcacacatcacac

Function

NR:

description
sporozoite surface protein 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137748 True 2445 lncRNA 0.49 2 19271405 19274795

Neighbor

gene id symbol gene type direction distance location
LOC110503718 LOC102193556 coding upstream 12331 19131905 ~ 19259074 (+)
LOC110520830 LOC106605779 coding upstream 271195 18994838 ~ 19000210 (+)
LOC118938275 stl2 coding upstream 280038 18984795 ~ 18991367 (+)
stl2 stl2 coding upstream 293894 18971209 ~ 18977511 (+)
LOC110517769 stl2 coding upstream 310010 18956065 ~ 18961395 (+)
LOC110512786 LOC105019084 coding downstream 32781 19307576 ~ 19347300 (+)
LOC110534362 LOC106575226 coding downstream 117942 19392737 ~ 19433631 (+)
LOC110537022 LOC106576929 coding downstream 169336 19444131 ~ 19481383 (+)
LOC110537095 LOC106576906 coding downstream 251368 19526163 ~ 19528660 (+)
LOC110537107 LOC106605819 coding downstream 291084 19565879 ~ 19579511 (+)
G119413 NA non-coding upstream 92 19270262 ~ 19271313 (+)
G119412 NA non-coding upstream 1916 19268523 ~ 19269489 (+)
G119411 NA non-coding upstream 3102 19268089 ~ 19268303 (+)
G119392 NA non-coding upstream 18813 19227193 ~ 19252592 (+)
G119415 NA non-coding downstream 1533 19276328 ~ 19286899 (+)
G119417 NA non-coding downstream 13365 19288160 ~ 19288443 (+)
G119418 LOC106610265 non-coding downstream 14404 19289199 ~ 19289470 (+)
G119419 NA non-coding downstream 16600 19291395 ~ 19291791 (+)
G119425 NA non-coding downstream 25941 19300736 ~ 19301057 (+)
G119245 stl2 other upstream 309940 18934673 ~ 18992769 (+)
G119160 NA other upstream 599085 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 635364 18633839 ~ 18636041 (+)
LOC110536658 LOC106577300 other upstream 794271 18457284 ~ 18481741 (+)
G119794 u2af2 other downstream 231856 19506651 ~ 19507338 (+)
LOC110537226 LOC106575133 other downstream 401940 19676656 ~ 19683059 (+)
G119952 nat14 other downstream 427304 19702099 ~ 19703788 (+)
LOC110537243 LOC106576860 other downstream 493475 19768270 ~ 19778335 (+)

Expression


Co-expression Network