XLOC_020988 (CU062647.1)


Basic Information

Item Value
gene id XLOC_020988
gene name CU062647.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 13422568 ~ 13431304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041276
aaataacTTACACAGAACATTCCCTATAagcatttcagtttatttattgtaACCATAAAATGATGTTTCCggaaggtttattttatttattttttttgtaggttATAATTTCACTACTTaaacaaattcaattaaaaataacatttttaattaagcCTACTTATTTCTTTTAACTCTGTATTTGAAATGAACACCAAATAATTCCTCACAAGCTATGCTAGCAGTCAATTAACCATTTTAGCCAGTAATGATTCCTCTTGAAGTATTCGTGTTAGCAAAATGACATCTTAAAATAAACAACATCTGACAGATTCATTATTCAGTTGTCACCTCTCTTCAAAAACCTCTCTCCTAAGGTAACATTTGCTCGGCCTGGAGAATTGAGATGAAAAACATCACTAGTCAGCTGACGCGAGCGACTGTTAACAACGCTAACACCAATTACTCACACCTGAGAGTCAAAAAGAAACGGTTCGCGCTGACAGGCGGAGAAATGGAAGTGAAAAAGAAGACACCAAATTACCAGGCGGCTTTATCTGCGCACTTCCAGGTCTTCGTGGTCGGATGAGTGACTTTTATCCGGCAATCAGCTCGAAAGATGAAGAAAATGGCATTTTTTAACAGCCTGAGCTACAATTTGAGGGATGCAGCGAGAGGTTTGGATGTTCTGTATGGATGCGACAGAGGCAGGCAGCCAAAGCAACGTCGGATGATGAGCATGAGTGAGATAGTACACTTTGATAGTGAGGACAGCCGATATATTCTGGCACCAGTCCAAGCATGCTGAGAGGAACGGATGACCTGCGTCAAAAATGGTGCTGGCAACTGTAACATCTGCGTAGGAGGCCGAATGGTCCTTTGCAAGTGAAGAGCTGCACTCCACTGTTCCTACCTCAAACCATAAATGGATAAGCATATGGACCCTGGCTTCAAGGAGAGCAAAGACTGCAGGAATTAATTCAATCATACTTTCACCGGGATGGGGTATATGAACAAATGGCACTGGAATAACTGGAGGCTATTTGATGCTAGCCCACTACATCCGACCCAAAGGTATGCATTTTCATGAGGATTTGATGCTTTGTTATTGCAGTTGTCCACTGGTCCTTGATTGATTTTGCCTCATTGGCATTCACAATTTCCTGTCCTTTTGTAATCGCCCTTAAATAGAC
>TCONS_00041275
aaataacTTACACAGAACATTCCCTATAagcatttcagtttatttattgtaACCATAAAATGATGTTTCCggaaggtttattttatttattttttttgtaggttATAATTTCACTACTTaaacaaattcaattaaaaataacatttttaattaagcCTACTTATTTCTTTTAACTCTGTATTTGAAATGAACACCAAATAATTCCTCACAAGCTATGCTAGCAGTCAATTAACCATTTTAGCCAGTAATGATTCCTCTTGAAGTATTCGTGTTAGCAAAATGACATCTTAAAATAAACAACATCTGACAGATTCATTATTCAGTTGTCACCTCTCTTCAAAAACCTCTCTCCTAAGGTAACATTTGCTCGGCCTGGAGAATTGAGATGAAAAACATCACTAGTCAGCTGACGCGAGCGACTGTTAACAACGCTAACACCAATTACTCACACCTGAGAGTCAAAAAGAAACGGGGAACAACAAAAAATTTGTGATTGACTGCTCGAGGGACTGGACACTAATGAAACAATCTCTCCCTTCCTAGTTCGCGCTGACAGGCGGAGAAATGGAAGTGAAAAAGAAGACACCAAATTACCAGGCGGCTTTATCTGCGCACTTCCAGGTCTTCGTGGTCGGATGAGTGACTTTTATCCGGCAATCAGCTCGAAAGATGAAGAAAATGGCATTTTTTAACAGCCTGAGCTACAATTTGAGGGATGCAGCGAGAGGTTTGGATGTTCTGTATGGATGCGACAGAGGCAGGCAGCCAAAGCAACGTCGGATGATGAGCATGAGTGAGATAGTACACTTTGATAGTGAGGACAGCCGATATATTCTGGCACCAGTCCAAGCATGCTGAGAGGAACGGATGACCTGCGTCAAAAATGGTGCTGGCAACTGTAACATCTGCGTAGGAGGCCGAATGGTCCTTTGCAAGTGAAGAGCTGCACTCCACTGTTCCTACCTCAAACCATAAATGGATAAGCATATGGACCCTGGCTTCAAGGAGAGCAAAGACTGCAGGAATTAATTCAATCATACTTTCACCGGGATGGGGTATATGAACAAATGGCACTGGAATAACTGGAGGCTATTTGATGCTAGCCCACTACATCCGACCCAAAGGTATGCATTTTCATGAGGATTTGATGCTTTGTTATTGCAGTTGTCCACTGGTCCTTGATTGATTTTGCCTCATTGGCATTCACAATTTCCTGTCCTTTTGTAATCGCCCTTAAATAGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117397

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041276 False 1172 lncRNA 0.41 4 13422568 13431304
TCONS_00041275 True 1243 lncRNA 0.41 3 13422568 13431304

Neighbor

gene id symbol gene type direction distance location
XLOC_020987 si:ch211-227m13.1 coding downstream 72212 13276693 ~ 13350356 (-)
XLOC_020986 NA coding downstream 178017 13201478 ~ 13244551 (-)
XLOC_020985 NA coding downstream 234236 13187861 ~ 13188332 (-)
XLOC_020983 ahr2 coding downstream 257382 13046270 ~ 13165186 (-)
XLOC_020984 BX908726.1 coding downstream 310246 13101736 ~ 13112322 (-)
XLOC_020989 cntnap5b coding upstream 27431 13458735 ~ 13544244 (-)
XLOC_020990 NA coding upstream 174977 13606281 ~ 13607563 (-)
XLOC_020991 si:ch211-279g13.1 coding upstream 207282 13638586 ~ 13649604 (-)
XLOC_020992 NA coding upstream 237681 13668985 ~ 13693627 (-)
XLOC_020993 CT990618.1 coding upstream 280130 13711434 ~ 13716585 (-)
XLOC_020981 NA non-coding downstream 457691 12958222 ~ 12964877 (-)
XLOC_020980 NA non-coding downstream 472276 12949820 ~ 12950292 (-)
XLOC_020995 BX649510.1 non-coding upstream 514649 13945953 ~ 13946067 (-)
XLOC_020996 BX649296.1 non-coding upstream 588300 14019604 ~ 14019722 (-)

Expression


Co-expression Network