XLOC_020989 (cntnap5b)


Basic Information

Item Value
gene id XLOC_020989
gene name cntnap5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 13458735 ~ 13544244 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041277
TGAAGTACAGATGCCAACAAGACCAAATCTTAAAGAttccttttgttgttgtttgtttgttttcatacaGACGTTCCCTGGAAACACAAATTCAGATGGGGTTGTTCACCACAAGCTCTCGCACTCAATACGAACACGGTTTCTGCGGTTCTTGCCGATGGATTGGAGTCCCGGAGGATGGATGGGCCTCAGAGTGGAGGTCTATGGCTGCGCATACAagTCTGATGTGGCGGACTTCAATGGAAGGAGCTCTCTACTGTATCGGTTTAACCAGAAATCCACCAGCACGGTGAAAGACGTCATTTCATTGCGGTTTAAGAGCCAACGAGCTGACGGGGTCCTTGTGCACGGAGAGGGACAAAGGGGTGATTACATAACGCTAGAGCTGCACAAGGGCCGGCTTGCCCTGCATATCAATCTGGACGATGCTAAGACGCACCCAAGCAGCGGCCATGTGTCAGTGTTTTTGGGTGGTCTTCTGGATGACCAGCACTGGCACTCCGTCCTGATTGAGCGATTTAACAAACAGATCAACTTCACTGTGGACAGACTGACCAAACACGTCAGGACGGGTGGACTGGACGATTCTCTGGAGGTCGATTATGAGCTCAGCTTCGGCGGCATCCCTCTTCCTGGAAAACCAGGCACGTTCCTGCGCAAAAACTTCCATGGCTGCATGGAGAACCTCTACTACAACGGCGTCAACATCATCGACCTGGCCAAACGCCGCAAACCACAGATCTACAGTGTGGGTAACGTGAGCTTCTCGTGCTCGGAGCCGGTTCTGATCTCCTCCACCTTTTTGAGCTCCAGCAGCAGTTTTCTGGCTCTTCCTCTGGACTCGGCTGCAGAAACGCTGTCAGTGAGCCTCCAGTTCAGGACGTGGAATCGGGAAGGCATGTTACTGTCCGTTGGCCTGGGGAAAGATTCTGAGAAACTGCTTTTGCTTCTCGTTCATGGGCAGCTGAGACTCTCGCACCACAGATCAGCACTGCAGAGCTCTGATATAGTCATTGGTCAGGCTCTGAGTGACGGTCAATGGCACACGCTGTCCATTAGCATAGCAGGTTACCAGGTGTCGCTGGCGGTAGACGACGAGCCTCCGTCCACCATGCAGATGAAGGAGGTTGCGCTGCCGGGGAAGAGCCTGCTAATTGGaggaTGCCCATCAGTGTTGAGCAATCAGGGTTGTCGGAATCCCACGATGGCCTATCAAGGCTGCATGCGCTCTGTTGTCATCAACAACAAGCCAATCAACTTCTACCTGGTGCAGCAAGGCCTGCTCGGAAACTACAGCAAGCTCCAGTTTGACATCTGTGGCATCCGTGACAGatGTCTTCCTAACTACTGCGAGCATGATGGAGTGTGCTCTCAATCCTGGAGCACGTTTTTCTGCGACTGCTCGGGAACAGGATACACCGGAGCCACCTGTCATAACTCCATCTTTGAACCGTCCTGCGAGGCTCACCGACTCACAGGAAGCGCCTCAGGCTTTTTCTCGATCGATCCTGATGGAAGCGGACCGCTCAAATCCACCGTCGTCTACTGCAACATCACTGATGATAAAGTTTGGACTGTGGTGAATCATAACAGCACTGCAATGGTTCGAGTTCAAGGTTCATCTCTTCAGCAGCCTCATGTCATGACGTTTAACTACAGCACATCTCTGGAACAGCTGCGGACACTCGTGGGCAGATCTGAACACTGCCAGCAGGAAGTTGTTTATCTCTGCAGGAAGTCCCGCCTCTTCAACACATGGGATGGGACGCCCTTGTCCTGGTGGCTTGACCGGGCAGGAGAGAGAAGGACGTACTGGGGCGGTTTCCTCCCCGGAGTCCAGCAGTGCGCTTGCAGTCTGGATGAAAACTGCATCGACATGAATCACTTCTGCAACTGCGACGCCGATCGCAGCTCATGGGAGAATGACACAGGAATTTTGTCCTACAAAGAGCATCTACCAGTCACTGAGATCTTGGTTGGAGACACAAACCGAAGCGGCTCAGAAGCCATTTACAGGATCGGCTCTCTGCACTGCTTTGGGGACAGGTTTCTGTGGAACGCAGCTTCATTCTATCAGGAGTCCTCGTATCTTCACTTCCCCACACTTCAAGCTGAGCTGAGTGTCGACATCTCGCTGTATTTCAAGACCACCGCTCCCTCAGGGGTCTTCCTGGAGAATCTGGGCACTAAAGACTTCATTAGACTGGAGCTCAGCGGGCCCTCTGTGGTAACCTTCACGTTTGACGTAGGCAACGGCCCGGTAGTTCTGACGGTGAAGTCTCACGTTCCTCTGAATGACAAGCAGTGGCATTACGTTCGATCGGAGAGGAATGTGAGGGAGGCGTCGCTGCAGGTGGACCAGCTGCCCTTACGCTTCCTGGAGGCTCCATCCGAAGGCCACACCCACCTTCAGCTCAACAGCCAGCTGTTCATTGGAGGTACAGCATCGAGGCAGAGAGGATTTTTAGGGTGCATCAGGTCATTAAACATCAACGGGATGACGCTTGACCTTGAGGAACGGGCTAAAATGACCCCCGGGGTCAGTTCGGGATGTCCAGGTCATTGCAGCAGCCAAAACAGCTTGTGTCACAACAGGGGGAAGTGTATTGAGAAGAGCAGCGGATACGTTTGTGACTGCACACACTCTGCCTACGGAGGACCCAACTGCAAAAAAGAGGTTTCCGTGTCATTTGAAAGCGGGTCCTCGGTGACCTACACCTTCCAGGAGCCGTTTTCTGTGATGCGCAACCACAGCCGTCAGTCCTCCGCGATCTTCGCCCAAAGCAGCAATTCACGGGAGAGCATCGCTTTCAGTTTCCTCACAACTCAGACGCCTGCCATGCTTCTGACCGTCAACACCTATCATCAGCAGTACATGGCCATTATTCTGGCTCACAATgGGAGTTTGCAGATTTGGTATCGGCTGAACAGAGAGAAAGATCCTGACATCTTTATGCCAACGTCCCTTAATTTGGCCAATGGGGAGCTTCACAGAGTTCAGATTCATCGAGAGGGACGGGACATGTATGTCCAGATTGATAAAGATACCAATCTGAAATACAGCCTGTCGACGGACAAAGAGTTGATCACGATAAGGTCTTTGACATTGGGGAAAGTCACAGGTCGAGCTGGTGTTGATGAAGAGGTTCTGCAGGCGGGATCGAGAGGTTTTATTGGCTGCCTGTCTTCAGTTCAGTTCAACCATTTGGCTCCTCTCAAGGCAGCCATATTAAATCGAGGAAGTTCGTTGGTCAACGTCCTTGGTAACCTGGTAGAGTCCAATTGTGGAGAGCTTGCGGATAAGTCTTCATCCAGATCTTTGTCAGATTCTACAGATACAGGAAgtagaggaaagaaacttttgaATGCTCAAAATGACTCTGCGGTAATTGGAGGTTTGATAGCAGCAGTAGTGCTCATTACCCTCTGCGCTGTGGCTGTGATGACCCGCTTCCTCTACCGACATCGACACGACCGTACACGGCAGATGGCCCCCGTCAAGGAGAAAGATCACCAACCTCGGCCAGAACTCAGATACCGGGCTGAGCTGGACCTTCACAGTGCCATGAGAGACAGCAGGAAAGAGTACTTCATCTGACCCATGGCATATAAACCTTGTGACCTCCACTGAGTCGCTGTGACCCTGCGCTGTGCGCCAACTCTGTGGACAGGGATTGGGGACAGGAAGTCAGCTGAGCCTTGTGGACACAGCCAGTGCCCTTCAACCCACCCAACCACTGTCCTTTAGCATCCAGGATTCAGGAAACAGAAAGTACACACCAGAGAAATGTTGAATTACGGCTGTATGCAGATGGATTTTGACAGCCCGGGTTCATATCGGTTGTTCTTTGCTGCGGTTTTAGACAAAGAGTTAGAAGATCAGGTGGCTTCAAAGCTCAGAAGCCGTACCCAAACATGGCCTTCAGCCCTTCGCAGAGGATGGAGAATCAAACGTTTGAAGCGACTCTTTTGCTTTCAGGGCTAATTATTTAACCAGACAACAAAGAGATTACAGAGACGTTTGTGTGCCACACATGCGAATCACTCTGGCAGACAAACAAACACTCAACGGTTTCCGTTCTGTGGACCGTGACCAATCAAACGGCTCTGGTGCGGTACTAATCCAGCACGAATGGTCTTGTTCGGCCATGGGCAAGCACGATGTAGTGATGCAAATAAAGTGGGTGATGTTACCACCGGGGCTCTTTCACTTCCTCATTCCTTTGCTCTGGTTCTCCTTCACACATTCATCCCCTGTTTCCTTTCCCGAGGACAACCTAAAAGGCATTTGCAACGGATTTAACTTACCAGTCATGTGAAGAAAAGGGAAGAGCAGGAAAAAATTACTTGATTGTATCATGATTGGGTCATATGGGCATTGTGTTCTAGAATGGAGGTTTGTTTTGGAGTGGAGGGATTGATTATGATATCCGAAAAGGGGATGGATCAAATTTTGGTTTGGTTCCTTTTTTGAATTTGGAACAATGTGTTCTAGTTAATCATTCAAAATTAGGGTGAAGGGGCTATAAAATAGCATGTCCTATATTGGTAGCTTTAATTGTTGTCTGGGGGAATAGAAGTGGATTTGTGTGGACTTTATTGGACACAAATCCTTGTAGTCCAAGTTGATTTCTTAATCTTCTTGGGCTGTTCTGCTACATGGTCAAGACTATAAATTTTGTGGTGCTAAATGTTTATTTAGCCACTTTGAAAGGTTGTTTAGCATATAATGGTCACAGAACTCCAATTCTAATTTGATAGGGTCTTTAAGGAAAGTTATTgggtcaatttttatttttatgctgtcTTTAAAATCTAAGACTTCCTCATTCAGTGCGTCTGTTTCTGGTGCTGGGGCTTTGCTACAAGCTTTTAGAGATTTACTGTTGGAAGTGCATGTCTGATACACCCTAGCAGGATTTTCAGGCCCTAATGTGACCCCTATACACTGATAGCCAATAGTCTTGTGACCAAATCTGAGGTCAGTGATCAGTTAAAAGAAATACTGTTccagaaataaaaaaaggatgTTCTACTTGCATAAATCACGTTATGTAGGTCTCAACCACAAAAGCGTACATGCGTCTTATCCACTGAAAAAAACAAGTTCTGCAAAATAGGGTTTTTATGCTATCCAGATAGAGAGGATGCAGCATCTTCAAAAGAACGTTGAGGACAATAAAAAATAGACCTTGAATCCTTGAATATAGTATAGTTTTAACACCATATTGGATTTCATTATGCCcccaatatatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacttaacattaaattgtatttaaaattatttaatatttgttttattagattattagatttattatttcAATCAATTCTTTGAGAGACTAGCCTGAAGGACCTGAAATAAAGCCCCAATGTCCTCCAATCTTTAATAACACACATTTTTCACATTTCCCTACGTTCACTGATGTAAAGTCTCATATGCTGATCAGAAATGGCCATGATGGTTTCTTTTTCTTCTGCTTTTCCCAGGAACACAAAGTTTCCTCCGAAGCACGTAGATGGTTTCACACTAAAGTGCATCACACCAGTCTTAAACTCTTAGACTGGGAATATGAGAATTCATTCTGTACTGGTGGGATCTGATTCTATTGCATTATATTCCAGAGGAACAGAGTAATGGAGTCAAAATATCATTCACATCCTTTTAAAGGTTGCCAGGTCTTTCCCGTATGAGCCTCAAATATGTCTTTGATCATATTATGATTTCTTCCTAGCCGCCATGAGATATAATCTAAGTATAATTGGTTCCCGGACTCAACATGATGCGAAAAATGTTCCGAACAGGATGGTGTAGGAAAGGGTCAAGGTGTCCAGATTTCTCCGATAATACCCACAACACATCAGAGCGAAGCTTCGAGGCGGTATCTAATCATCGCCCCACCCAGCCCCCTCATTTGTCATTTTCAGTGGCGTCAGGACAAAGAATCAGTAAAGCTAGATATTTATCTTGCCGTGATCTATGTAAATGTCACTCCTGCGAAGGAACAGAGATGATGGATCCTCTCTCGAACAGCCCTGGGCTCAGAACTGAGTACGATTTACAGCCAAATCTATCTCAGTGTGGATAAACACCAGCCTGAATGTTGCACCATGATTAGGCCGTTCCTCTCATTAGATTTCACTACGTCTCACTGAAATAATGAATCCTCAATCTCAGCTATTCATGCTACCAAAACGGACACGGAACAGGATGCCTTCCCAAGCAGTTTCAGCAGCTTATAGTGTCTGTAGAAGTTTTTTGTTGAGCTACTCATCAGTAAATGTACAAACTTTTATGCATTTCTTGATTATTTACCTACCCCCAGCCCATCCAAAAAGTAAATGACATTCTCTCTTTTGCTGAGGGAAAATAAAGGTCCAGACTAAAAAGGAAACTTACACAAATAACCCTGGTGGAAAACCTTCTGTGGATCAGTAGATCCCTAGCTGGCATACACTAATCCCCCAAACCTCACTTctatctgggtcacggcaccaatataaaCCCTACAGTTATTTGAGCCAGCAATTCGGTCATGATAGGCAGGCATGTAAAAGATCACATCCTATAATATCTGTCACTTGTGCAGCCCTTGAGGCCAGGAAAGTAAGATTTACTAGCACAGCTTTCATTAGCTGGCCTTTGTTACACTCCGCCCTAAACCTTACcctcatccgggtcacggcaccaatataaccCCTTCTACTTCACCCCACTCTGAGCAGAATTTGAACTGGTGATTGAGGTTGCAGACTAACATTGACACTTGCGTCAGTTGTTCCTGGACCTCTTGAGATTATGGGAAGTTAGATTTGCTTGCAAAGCTCTCACTAGCTCACATTCATGCTGTCGTTTTTAAGAACGGATTCATATTTCAGTTGAACCGCACCAGAGATCTTTTGGAAGTGGACAGAGATTCATCTTTTCAGGGTGTTGGTCCACTTGTTTGTTTTGCATCAAGTATCCAAAAATACACTAATGACCCCCcctttaaaaaatgaattgcGCAAGGGTTTGTTCAAACCAATcaaacctgccaagtgtgaaTACTCCCTTAGAAACACTAGGAAGGTCACGTGACAATATGATTAAGTATTGACTACAGTGAAATCACATATTTCACCagatcattaatattaatgaacCAAGGTTGATATAATCCATTTGTCCATATGCCCCTGGGTAATTTCTGGATGAAAATGTGACCTGCTAACATAGtttgtgaatttacactgaatgcaGGGATATGAAGTAGTAGCTGCTGTTTTTGAAGGAATGTAGCCGTGTCAGTTGTGTTATGCTGTTTTGTAGATGTTTGGTTTTTGCTGAAATTCGCAGAATTCGCCAAGCTGCTGTCACGTATGGCACTCAGCTCACTTCCTCCATAACAAGCCAGAATGCCTGGTACACTAGAAAGCACTAACACCTTTCACTGAGCTAAAATCTTTTGTTATCTGAACAGTCTTGGTTGCGTTGCTTCTGCTGAATGCCACAGGTCTGCTCGGATTTCGATCGTTGCAAAAACAAAAgcataagaacaaaaaaaaagcgGTCAGTTGCCTAAACAAATTTTTTGAAGTGCATTTAAATCTTTTATTAACATGACAAATCACTGACAATGTTATGGACTTCTttattttaagcttgttttataTATTGTTAGAATTCTAGaggtgtattgtaaataaatgtatatttaataaaaaacagagTCATTTTTATAGCTTTATGTGCTACATTTCTGTGTCTTGTTTTCTTGGAGCAGCAGTGTTTATTAGCATGTTAGAAAAGATCTTGACGTGCATTGATAATCTGTCTCGGTCCTGAC
>TCONS_00041278
GTCGAGCTGGTGTTGATGAAGAGGTTCTGCAGGCGGGATCGAGAGGTTTTATTGGCTGCCTGTCTTCAGTTCAGTTCAACCATTTGGCTCCTCTCAAGGCAGCCATATTAAATCGAGGAAGTTCGTTGGTCAACGTCCTTGGTAACCTGGTAGAGTCCAATTGTGGAGAGCTTGCGGATAAGTCTTCATCCAGATCTTTGTCAGATTCTACAGATACAGGAAgtagaggaaagaaacttttgaATGCTCAAAATGACTCTGCGGTAATTGGAGGTTTGATAGCAGCAGTAGTGCTCATTACCCTCTGCGCTGTGGCTGTGATGACCCGCTTCCTCTACCGACATCGACACGACCGTACACGGCAGATGGCCCCCGTCAAGGAGAAAGATCACCAACCTCGGCCAGAACTCAGATACCGGGCTGAGCTGGACCTTCACAGTGCCATGAGAGACAGCAGGAAAGAGTACTTCATCTGACCCATGGCATATAAACCTTGTGACCTCCACTGAGTCGCTGTGACC

Function

symbol description
cntnap5b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CNTNAP5 (contactin associated protein family member 5).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-209 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CNTNAP5 (contactin associated protein family member 5).

Ensembl:

ensembl_id ENSDARG00000075189

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041277 False 7892 mRNA 0.45 21 13458735 13544244
TCONS_00041278 True 521 mRNA 0.50 3 13462984 13466246

Neighbor

gene id symbol gene type direction distance location
XLOC_020988 CU062647.1 coding downstream 27431 13422568 ~ 13431304 (-)
XLOC_020987 si:ch211-227m13.1 coding downstream 108379 13276693 ~ 13350356 (-)
XLOC_020986 NA coding downstream 214184 13201478 ~ 13244551 (-)
XLOC_020985 NA coding downstream 270403 13187861 ~ 13188332 (-)
XLOC_020983 ahr2 coding downstream 293549 13046270 ~ 13165186 (-)
XLOC_020990 NA coding upstream 62037 13606281 ~ 13607563 (-)
XLOC_020991 si:ch211-279g13.1 coding upstream 94342 13638586 ~ 13649604 (-)
XLOC_020992 NA coding upstream 124741 13668985 ~ 13693627 (-)
XLOC_020993 CT990618.1 coding upstream 167190 13711434 ~ 13716585 (-)
XLOC_020994 s100b coding upstream 301886 13846130 ~ 13857729 (-)
XLOC_020984 BX908726.1 non-coding downstream 346413 13101736 ~ 13112322 (-)
XLOC_020981 NA non-coding downstream 493858 12958222 ~ 12964877 (-)
XLOC_020995 BX649510.1 non-coding upstream 401709 13945953 ~ 13946067 (-)
XLOC_020996 BX649296.1 non-coding upstream 475360 14019604 ~ 14019722 (-)

Expression


Co-expression Network