G119794 (u2af2)


Basic Information

Item Value
gene id G119794
gene name u2af2
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19506651 ~ 19507338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU138223
TCTCTTTTGCCCAATAGCAAATGGATCCCCAGCCCCTACCCCCGGGTACTTCTCTGAACTCCACCTGGCCTTCTGATGGACTAGGTGAAACATTATGTCGCTCACACCTTTTCAGGTCAAAACAAGTGCCTAGGTGGTATGGGGTTAGGGGTCGATTTGAAATATGacaatccaccccccccccctcactatCCTCGCCTGTCGTCATCCTCTACCAGAAGTCTCGGCGGTGGTAGGCATCAGGGTCGCAGTATTTGGTCACCACCACCCGGTTAGCAAACTTCCTGCCCGTCAGACCCTGCATGGCCTTCTGGGAGTCAAACACTGACATGAACTCCACAAAGATcttgccAGTGCCAGGGACCTCCAGCCCATCCACAGGTCTGGGGATCTCGATGCTCTTGACCTGGCCGTACTTGCTGCACTCGTCCCTCACATCCTCCACGATCTCCTCATATTCCTCTTCATCCaccagctcctccacagccaccaTATTCATCAGACACAGCACCTCTGTGGGCAAGCCAGCCATCTGGGTCATTGAGCTGTTCATCAGGCCCGGCACCTGCAGCGTCACCGGGGTCTGGTT

Function

symbol description
u2af2 Enables enzyme binding activity and pre-mRNA 3'-splice site binding activity. Involved in mRNA splicing, via spliceosome; negative regulation of protein ubiquitination; and regulation of RNA splicing. Located in nuclear speck. Part of U2-type prespliceosome and U2AF complex. Colocalizes with Prp19 complex.

NR:

description
splicing factor U2AF 65 kDa subunit isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138223 True 589 TUCP 0.56 2 19506651 19507338

Neighbor

gene id symbol gene type direction distance location
LOC110537022 LOC106576929 coding upstream 25268 19444131 ~ 19481383 (+)
LOC110534362 LOC106575226 coding upstream 73020 19392737 ~ 19433631 (+)
LOC110512786 LOC105019084 coding upstream 159351 19307576 ~ 19347300 (+)
LOC110503718 LOC102193556 coding upstream 247577 19131905 ~ 19259074 (+)
LOC110520830 LOC106605779 coding upstream 506441 18994838 ~ 19000210 (+)
LOC110537095 LOC106576906 coding downstream 18825 19526163 ~ 19528660 (+)
LOC110537107 LOC106605819 coding downstream 58541 19565879 ~ 19579511 (+)
LOC110537165 LOC106605824 coding downstream 90175 19597513 ~ 19599416 (+)
LOC110537142 LOC106576877 coding downstream 130096 19637434 ~ 19645326 (+)
LOC110537226 LOC106575133 coding downstream 169318 19676656 ~ 19683059 (+)
G119795 NA non-coding upstream 151 19504866 ~ 19506500 (+)
G119856 LOC106606119 non-coding upstream 12527 19492925 ~ 19494124 (+)
G119855 NA non-coding upstream 14012 19492421 ~ 19492639 (+)
G119844 NA non-coding upstream 42735 19463328 ~ 19463916 (+)
G119814 NA non-coding upstream 96789 19407962 ~ 19409862 (+)
G119866 NA non-coding downstream 11603 19518941 ~ 19519677 (+)
G119883 NA non-coding downstream 45377 19552715 ~ 19562850 (+)
G119909 NA non-coding downstream 73483 19580821 ~ 19582374 (+)
G119916 LOC106605822 non-coding downstream 84204 19591542 ~ 19595167 (+)
G119899 NA non-coding downstream 153569 19660907 ~ 19750224 (+)
G119245 stl2 other upstream 545186 18934673 ~ 18992769 (+)
G119160 NA other upstream 834331 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 870610 18633839 ~ 18636041 (+)
LOC110536658 LOC106577300 other upstream 1029517 18457284 ~ 18481741 (+)
G119952 nat14 other downstream 194761 19702099 ~ 19703788 (+)
LOC110537243 LOC106576860 other downstream 260932 19768270 ~ 19778335 (+)
G120059 grl1 other downstream 416734 19924072 ~ 19928477 (+)

Expression


Co-expression Network