G119916 (LOC106605822)


Basic Information

Item Value
gene id G119916
gene name LOC106605822
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19591542 ~ 19595167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU138379
ACTTTATATAGTCACAATTTATTTACATTGGGTTATGTACagcaaaacaaacaagaaattagCAATGACAACATTGGTTTAGGCAAGGAAGGAGTATAAACAatattgtgtgtgtatgcgtttgAACTGAAAAGGGCTAAAAACTGTTAACCCCAGGCTTGAGATTTACAATAATGTAGAACAAGCTTCCCATCGCTGCCAAAACATTCAAACAGGACTCCTACTTCCTGATCAGGCGAGGGAGAGAATGACTGGTTGACGTAAATGaaCAGCTGTTCATTGGCCTCCATCTTGAGGAATCGAGAGATGAATTGAGAGAGTGATTGCACTGTCCTCCCTTTCTCTACCGACCATTTCTTTGTCTTCATGATGGGGGTGTCTCCTACTGCCTTCAACAACACATCAACttgggagaggaggatgaagggagaatgagagagagacagaatacaTGTATATTTTGCATAGCATAACAATAGACTGCTAGATTAAAGTTA
>TU138377
ATAGGATCGTGCTAGGCTTTATTTGCTCCCACTGTAAAAATGACACAGATTAACTATCTTAGGTTAGTTCTAAATATCTTTGCCTCATTGGTGCATATACCAGAGGTATCACCTGTCCACTTCCTCTAGCTGAAGGGAAGGAGGCAAGAGACAACTATTGAGAAGCACACACAATAACTCACCAGCTGTTCATTGGCCTCCATCTTGAGGAATCGAGAGATGAATTGAGAGAGTGATTGCACTGTCCTCCCTTTCTCTACCGACCATTTCTTTGTCTTCATGATGGGGGTGTCTCCTACTGCCTTCAACAACACATCAACTTTTTTTCTTCTCGTCTGCCGTCCCCGAGTCTTCCGTAGGCTGTTGTGGGGTTGAAGGCTCATCTTTTTGCGTTTCTGTAGGAGACTCTGCGTTGGCAGACATCCTCAGCAGTCCTTATCATGAGTGTGTGCACTAGATTCTGACACGCACT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138379 False 497 lncRNA 0.40 3 19591542 19594212
TU138377 True 472 lncRNA 0.46 2 19593803 19595167

Neighbor

gene id symbol gene type direction distance location
LOC110537107 LOC106605819 coding upstream 12031 19565879 ~ 19579511 (+)
LOC110537095 LOC106576906 coding upstream 63623 19526163 ~ 19528660 (+)
LOC110537022 LOC106576929 coding upstream 110159 19444131 ~ 19481383 (+)
LOC110534362 LOC106575226 coding upstream 157911 19392737 ~ 19433631 (+)
LOC110512786 LOC105019084 coding upstream 244242 19307576 ~ 19347300 (+)
LOC110537165 LOC106605824 coding downstream 2346 19597513 ~ 19599416 (+)
LOC110537142 LOC106576877 coding downstream 42267 19637434 ~ 19645326 (+)
LOC110537226 LOC106575133 coding downstream 81489 19676656 ~ 19683059 (+)
LOC118944064 NA coding downstream 103324 19698491 ~ 19699519 (+)
LOC110537243 LOC106576860 coding downstream 180262 19768270 ~ 19778335 (+)
G119909 NA non-coding upstream 9168 19580821 ~ 19582374 (+)
G119883 NA non-coding upstream 28692 19552715 ~ 19562850 (+)
G119866 NA non-coding upstream 71865 19518941 ~ 19519677 (+)
G119795 NA non-coding upstream 85042 19504866 ~ 19506500 (+)
G119856 LOC106606119 non-coding upstream 97418 19492925 ~ 19494124 (+)
G119899 NA non-coding downstream 65740 19660907 ~ 19750224 (+)
G119893 NA non-coding downstream 88626 19683793 ~ 19685529 (+)
G119955 LOC106605829 non-coding downstream 115315 19710482 ~ 19713435 (+)
G119986 NA non-coding downstream 163291 19758458 ~ 19758725 (+)
G120018 NA non-coding downstream 224805 19819972 ~ 19821386 (+)
G119794 u2af2 other upstream 84204 19506651 ~ 19507338 (+)
LOC110503718 LOC102193556 other upstream 334048 19131905 ~ 19259074 (+)
G119245 stl2 other upstream 630077 18934673 ~ 18992769 (+)
G119160 NA other upstream 919222 18670513 ~ 18672320 (+)
G119952 nat14 other downstream 106932 19702099 ~ 19703788 (+)
G120059 grl1 other downstream 328905 19924072 ~ 19928477 (+)
casp2 LOC106605831 other downstream 423532 20018602 ~ 20030933 (+)

Expression


Co-expression Network